Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete genome of Kuenenia stuttgartiensis MBR1 from a membrane bioreactor enrichment

ABSTRACT: Resolving the complete genome of Kuenenia stuttgartiensis from a membrane bioreactor enrichment using Single Molecule Real-Time sequencing

PROVIDER: PRJEB22746 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	OCTL01.dat.gz	Other
	OCTL01.fasta.gz	Fasta.gz
	OCTL01.master.dat	Other
	ERR2135521_1.fastq.gz	Fastqsanger.gz
	GCA_900232105.1_sequence_report.txt	Txt

Items per page:

1 - 5 of 6

Similar Datasets

Metatranscriptomic analysis of an anaerobic ammonium oxidizing community dominated by Kuenenia stuttgartiensis

Project description:We compiled a metatranscriptome by extracting total RNA (including ribosomes), reverse transcription and solexa sequencing. We obtained quantitative data on the transcription of each orf to assess the importance of each orf to the metabolism of Kuenenia stuttgartiensis

2010-03-25 | GSE15408 | GEO

Candidatus Kuenenia stuttgartiensis

Project description:Candidatus Kuenenia stuttgartiensis overview

| PRJNA36787 | ENA

Metatranscriptomic analysis of an anaerobic ammonium oxidizing community dominated by Kuenenia stuttgartiensis

2010-03-25 | E-GEOD-15408 | biostudies-arrayexpress

Transcriptome Kuenenia stuttgartiensis bioreactor

Project description:Transcriptome Kuenenia stuttgartiensis bioreactor

| PRJNA625908 | ENA

Candidatus Kuenenia stuttgartiensis

Project description:Candidatus Kuenenia stuttgartiensis Raw sequence reads

| PRJNA690211 | ENA

Candidatus Kuenenia stuttgartiensis

Project description:Ca. Kuenenia stuttgartiensis enrichment culture - 2014 PacBio resequencing

| PRJNA327655 | ENA

Candidatus Kuenenia stuttgartiensis enrichment culture clone CH1

Project description:Candidatus Kuenenia stuttgartiensis enrichment culture clone CH1 Metagenomic Assembly

| PRJNA167262 | ENA

Candidatus Kuenenia stuttgartiensis enrichment culture clone RU1

Project description:Candidatus Kuenenia stuttgartiensis enrichment culture clone RU1 Metagenomic Assembly

| PRJNA168041 | ENA

Transcriptome Kuenenia stuttgartiensis bioreactor

Project description:Anaerobic ammonium-oxidising (anammox) bacteria, members of the ‘Candidatus Brocadiaceae’ family, play an important role in the nitrogen cycle and are estimated to be responsible for about half of the oceanic nitrogen loss to the atmosphere. Anammox bacteria combine ammonium with nitrite and produce dinitrogen gas via the intermediates nitric oxide and hydrazine (anammox reaction) while nitrate is formed as a by-product. These reactions take place in a specialized, membrane-bound compartment called the anammoxosome. Therefore, the substrates ammonium, nitrite and product nitrate have to cross the outer-, cytoplasmic- and anammoxosome membranes to enter or exit the anammoxosome. The genomes of all anammox species harbour multiple copies of ammonium-, nitrite- and nitrate transporter genes. Here we investigated how the distinct genes for ammonium-, nitrite- and nitrate- transport were expressed during substrate limitation in membrane bioreactors. Transcriptome analysis of Kuenenia stuttgartiensis planktonic cells under ammonium-limitation showed that three of the seven ammonium transporter genes and one of the six nitrite transporter genes were significantly upregulated, while another ammonium and nitrite transporter gene were downregulated in nitrite limited growth conditions. The two nitrate transporters were expressed to similar levels in both conditions. In addition, genes encoding enzymes involved in the anammox reaction were differentially expressed, with those using nitrite as a substrate being upregulated under nitrite limited growth and those using ammonium as a substrate being upregulated during ammonium limitation. Taken together, these results give a first insight in the potential role of the multiple nutrient transporters in regulating transport of substrates and products in and out of the compartmentalized anammox cell.

2020-06-05 | GSE148825 | GEO

Proteome of "Candidatus Kuenenia Stuttgartiensis" strain CSTR1 growing planctonically in semi-CSTR reactor

Project description:The dataset provides the whole proteome of the anammox bacterium "Candidatus Kuenenia Stuttgartiensis" strain CSTR1 growing planctonically in semi-CSTR reactor. The bacteria were growing at high growth rate (0.33 d-1) (reactor HRT 3d).

2020-11-11 | PXD018553 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data