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First record of azalea rough bollworm Earias roseifera BUTLER, 1881 in Europe

ABSTRACT: First record of azalea rough bollworm Earias roseifera BUTLER, 1881 in Europe

PROVIDER: PRJEB30266 | ENA |

REPOSITORIES: ENA

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Pluteus rugosidiscus (Basidiomycota, Pluteaceae), first record of this North American species in Europe

Project description:Pluteus rugosidiscus (Basidiomycota, Pluteaceae), first record of this North American species in Europe

| PRJEB25614 | ENA

First record of the tropical red-banded thrips Selenothrips ru-brocinctus (Giard, 1901) (Thripidae: Panchaetothripinae) in Europe

Project description:First record of the tropical red-banded thrips Selenothrips ru-brocinctus (Giard, 1901) (Thripidae: Panchaetothripinae) in Europe

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First record of Acanthosiphonia echinata (Rhodomelaceae, Rhodophyta) in the Mediterranean Sea

Project description:First record of Acanthosiphonia echinata (Rhodomelaceae, Rhodophyta) in the Mediterranean Sea

| PRJEB33412 | ENA

Standing at the gateway to Europe - the genetic structure of Western Balkan populations based on autosomal and haploid markers

Project description:Here we present genome-wide high-coverage genotyping data on a panel of 75 human samples from Western Balkan region, Europe, that are used in addition to public data in studing the genetic variation of Southern Europe that was sequenced to the avwerage depth of 1X.

2014-08-22 | GSE59032 | GEO

Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis

Project description:This SuperSeries is composed of the following subset Series: GSE35612: Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis (acute phase) GSE35613: Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis (chronic 1 phase) GSE35614: Microarray analysis of gene expression in rams experimentally infected with a rough virulent strain of Brucella ovis (chronic 2 phase) Refer to individual Series

2012-02-08 | E-GEOD-35615 | biostudies-arrayexpress

Differentially expressed genes in rough and smooth colony isolates of Clostridioides difficile

Project description:Purpose: to determine the differentially expressed genes in the phase-variable rough and smooth colony isolates of C. difficile Methods: C. difficile R20291 was grown on BHIS agar to obtain distinct colonies. Individual rough and smooth colonies were chosen for propagation on BHIS-agar for 24 hours as described in Garrett, et al., PLoS Biology, 2019. Growth was collected from n = 2 biological replicates. RNA was purified using TriSure and chloroform, beadbeating, and isopropanol/ethanol precipitation. Quality was verified with Bioanalyzer Assay. Samples were submitted to Genewiz for depletion of rRNA using the TruSeq RiboZero Gold Kit, library preparation, and single-end sequencing on the Illumina HiSeq 2500 platform. RNA sequencing analysis was done using CLC Genomic Workbench v20. Reads were mapped to C. difficile R20291 genome using the software's default menalties for mismatch, deletion, and insertion differences from the reference genome. Transcript reads were normalized as RPKM. Results: 88 genes were differentially expressed between bacteria from rough versus smooth colonies, with equal to or greater than a 2-fold change and p < 0.05 with FDR correction.

2020-09-27 | GSE158225 | GEO

First Record of Mosquito-Borne Kyzylagach Virus in Central Europe.

Project description:RNA of Kyzylagach virus (KYZV), a Sindbis-like mosquito-borne alphavirus from Western equine encephalitis virus complex, was detected in four pools (out of 221 pools examined), encompassing 10,784 female Culex modestus mosquitoes collected at a fishpond in south Moravia, Czech Republic, with a minimum infection rate of 0.04%. This alphavirus was never detected in Central Europe before.

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Microarrays of macrophages infected with smooth or rough Brucella suis

Project description:The macrophage-Brucella interaction is critical for the establishment of a chronic Brucella infection. Smooth virulent B. suis strain 1330 (S1330) prevents macrophage cell death. However, rough attenuated B. suis strain VTRS1 induces strong macrophage cell death. To further investigate the mechanism of VTRS1-induced macrophage cell death, microarrays were used to analyze temporal transcriptional responses of murine macrophage-like J774. A1 cells infected with S1330 or VTRS1.

2011-06-24 | GSE21117 | GEO

New record of Microtus mystacinus in Eastern Kazakhstan

Project description:New record of Microtus mystacinus in Eastern Kazakhstan

| PRJEB24290 | ENA

Transcriptome analysis of long rough dab (Hippoglossoides platessoides) liver slice culture exposed to benzo[a]pyrene.

Project description:Long rough dab (Hippoglossoides platessoides) is an important flatfish fish species in the north Atlantic arctic and sub-arctic marine foodweb that could be vulnerable to contaminant exposure from offshore petroleum related activities. The study was conducted to map transcriptome responses in long rough dab precision cut liver slice (PCLS) culture exposed to benzo[a]pyrene (BaP). BaP is a polyaromatic hydrocarbon (PAH) which is among the most toxic compounds found in crude oil. PCLS culture was performed under 10 µM BaP exposure for 72 h and transcriptome analysis (RNA-seq) analysis was performed to characterize de novo transcriptome of the liver and identify genes responding to BaP exposure.

2024-09-09 | E-MTAB-13932 | biostudies-arrayexpress

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