Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bracon brevicornis genome

ABSTRACT: Linked-read genome of Bracon brevicornis, a parasitoid wasp, with annotation

PROVIDER: PRJEB35412 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	CADCXW02.dat.gz	Other
	CADCXW02.fasta.gz	Fasta.gz
	CADCXW02.master.dat	Other
	ERR3804638_1.fastq.gz	Fastqsanger.gz
	ERR3804638_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Bracon brevicornis genome

Project description:Linked-read genome of Bracon brevicornis, a parasitoid wasp, with annotation

| PRJEB35412 | ENA

Trichogramma brassicae genome

Project description:Hybrid genome of Trichogramma brassicae, a parasitoid wasp

| PRJEB35413 | ENA

Project description:Parasitoid wasp Asobara sequencing

| PRJNA661661 | ENA

Project description:Parasitoid Wasp Sequencing Project

| PRJNA167911 | ENA

Chromosome-level de novo assembly and annotation of pig-tailed (macaca nemestrina) macaque genome

Project description:Macaque species share over 93% genome homology with humans and develop many disease phenotypes similar to those of humans, making them valuable animal models for the study of human diseases (e.g.,HIV and neurodegenerative diseases). However, the quality of genome assembly and annotation for several macaque species lags behind the human genome effort. To close this gap and enhance functional genomics approaches, we employed a combination of de novo linked-read assembly and scaffolding using proximity ligation assay (HiC) to assemble the pig-tailed macaque (Macaca nemestrina) genome. This combinatorial method yielded large scaffolds at chromosome-level with a scaffold N50 of 127.5 Mb; the 23 largest scaffolds covered 90% of the entire genome. This assembly revealed large-scale rearrangements between pig-tailed macaque chromosomes 7, 12, and 13 and human chromosomes 2, 14, and 15. We subsequently annotated the genome using transcriptome and proteomics data from personalized induced pluripotent stem cells (iPSCs) derived from the same animal. Reconstruction of the evolutionary tree using whole genome annotation and orthologous comparisons among three macaque species, human and mouse genomes revealed extensive homology between human and pig-tailed macaques with regards to both pluripotent stem cell genes and innate immune gene pathways. Our results confirm that rhesus and cynomolgus macaques exhibit a closer evolutionary distance to each other than either species exhibits to humans or pig-tailed macaques. These findings demonstrate that pig-tailed macaques can serve as an excellent animal model for the study of many human diseases particularly with regards to pluripotency and innate immune pathways.

2020-05-04 | PXD018943 | Pride

Diachasmimorpha longicaudata venom gland transcriptome

Project description:Diachasmimorpha longicaudata parasitoid wasps carry a symbiotic poxvirus, known as DlEPV, within the female wasp venom gland. We sequenced RNA from venom gland tissue to identify DlEPV orthologs for 3 conserved poxvirus core genes. The DlEPV ORFs identified from this transcriptome were used to design primers for downstream RT-qPCR analysis and RNAi knockdown experiments.

2020-02-03 | GSE144541 | GEO

Leptopilina boulardi (strain Lb17) venom gland proteome

Project description:The purpose of this project was to identify venom proteins from the venom gland of Leptopilina boulardi (strain Lb17), a parasitoid wasp species that infects fruit flies in the genus Drosophila.

2021-01-27 | PXD023836 | Pride

Leptopilina heterotoma (strain Lh14) venom gland proteome

Project description:The purpose of this project was to identify venom proteins from the venom gland of Leptopilina heterotoma (strain Lh14), a parasitoid wasp species that infects fruit flies in the genus Drosophila.

2021-01-27 | PXD023824 | Pride

Transcriptomic analysis of a symbiotic poxvirus in parasitoid wasps and fly hosts

Project description:Parasitoid wasps of the species Diachasmimorpha longicaudata are associated with a heritable poxvirus, known as DlEPV, that is stored in the venom gland of adult female wasps and transferred to tephritid fly hosts of the wasps during oviposition. We conducted a RNA-seq differential expression analysis to gain insight on how DlEPV can replicate in both wasps and their fly hosts but only cause pathogenic effects during replication in flies. Our analysis revealed that 91.2% (176 of 193) of DlEPV genes showed significant differential expression during peak virus replication in wasp venom glands compared to parasitized flies. Over 80% of DlEPV replication genes were significantly upregulated in wasps, while 79% of DlEPV putative virulence genes were significantly upregulated in fly hosts. These data therefore support a dichotomy of viral function, where virus replication is promoted in wasp tissue and virulence in host tissue. Such a division of viral activity could represent an important adaptation to maintain a stable symbiosis between this virus and its associated parasitoid.

2020-11-03 | GSE122240 | GEO

Ganaspis hookeri (strain GhFl, formerly 'G1') venom gland proteome

Project description:The purpose of this project was to identify venom proteins from the venom gland of Ganaspis hookeri (strain GhFl, formerly 'G1'), a parasitoid wasp species that infects fruit flies in the genus Drosophila.

2021-01-27 | PXD023825 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data