Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Large White pig sequencing

ABSTRACT: Sequencing of Swiss Large White pigs to assess genomic variation

PROVIDER: PRJEB39374 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR4336870_1.fastq.gz	Fastqsanger.gz
	ERR4336870_2.fastq.gz	Fastqsanger.gz
	ERR4336880_1.fastq.gz	Fastqsanger.gz
	ERR4336880_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 153

Similar Datasets

Trancription profiling of pig placenta, Erhualian pigs and Large White pigs, gestation day 75 and 90

Project description:From gestation day 75 to gestation day 90, an important stage for the placental and fetal development, the fetuses grow rapidly and need adequate nutrition. The Meishan pigs and the Large White pigs employ different ways in supplying the enough nutrients and oxygen to the fetus. The Meishan pigs increased the vascular density and the Large White pigs have the second increase in the surface of placenta. To understand the molecular basis related to late gestation placenta development in Chinese indigenous and Western breeds with different placental efficiency, samples were collected and used to hybridized. The results offered new data on understanding the molecular basis of placenta efficiency, and indicated that Erhualian pigs had the more efficient than the Large White pigs. Experiment Overall Design: Placenta efficiency (the body weight of a piglet divided by the mass of its placenta) of Erhualian pigs is markedly higher than Large White pigs. so placenta samples (female) from 6 Erhuanlian pregnant gilts at gestation day 75 (E75) and day 90 (E90) and 6 Large White pregnant gilts at gestation day 75 (L75) and day 90 (L90) were collected. RNAs from two female piglet placentas from each gilt were combined to 12 pools and hybridized to the porcine Affymetrix GeneChip.

2009-07-01 | E-GEOD-11853 | biostudies-arrayexpress

Porcine placenta, Erhualian pigs and Large White pigs, gestation day 75 and 90

2009-06-20 | GSE11853 | GEO

Pig Longissimus muscle: comparison between Basque and Large White breeds

Project description:Transcriptional profiling of pig skeletal muscle comparing two divergent breeds: Large white (LW, conventional) and Basque (B, local, indigeneous).

2012-11-20 | GSE26614 | GEO

Pig adipose tissue: comparison between Basque and Large White breeds

Project description:Transcriptional profiling of pig adipose tissue comparing two divergent breeds: Large white (LW, conventional) and Basque (B, local, indigeneous).

2012-12-03 | GSE34161 | GEO

The ChIP_seq of pituitary gland from Bama Xiang and Large White pigs

Project description:we performed chromatin immunoprecipitation coupled with high-throughput sequencing (ChIP-Seq) to profile histone H3 lysine 4 trimethylation (H3K4me3) and histone H3 lysine 27 acetylation (H3K27ac) in pituitary gland of adult Bama Xiang and Large White pigs with divergent evolutionary histories and large phenotypic differences.

2021-06-18 | GSE178380 | GEO

Liver miRNA profiles of newborn male Erhualian and Large White piglets using LC Sciences Pig miRNA Array

Project description:Erhualian (EHL) is one of the seven strains included in a Chinese indigenous pig breed called Taihu. EHL is famous for its early sexual maturity, large litter size, high adiposity, mild temper, good maternity and high tolerance to roughage and stress. To further investigate the role of miRNAs in different breed-specific metabolic characters, a comparison of miRNA expression profiles in liver of newborn Erhualian (EHL) and Large White (LW) piglets was carried out. Six LC sciences microarrays containing 236 miRNA procine probes based on miRBase Release 16.0 and 100 custom miRNA probes based on the solex deep sequencing results (li et al.,2010) were used. When compaired with LW piglets, 5 down-regulated and 8 up-regulated miRNAs were detected (fold change >1.2 and p value < 0.1) in the liver of EHL among the 236 miRbase probes. When considering the 100 custom miRNA probes, 2 down-regulated and 5 up-regulated miRNAs were observed. These results were further described in the unpublished paper Coordinated miRNA/mRNA expression profiles for understanding breed-specific metabolic characters of liver between Erhualian and Large White pigs.

2012-06-18 | GSE33523 | GEO

Short RNAs expression profiling of two Italian Large White pig backfat

Project description:We report the application of Illumina short RNA sequencing for characterization and discovery of miRNAs and moRNAs in two Italian Large White pig backfat tissue.

2014-07-14 | GSE47748 | GEO

Sus scrofa breed:Large White | cultivar:pig

Project description:Sus scrofa breed:Large White | cultivar:pig Transcriptome or Gene expression

| PRJNA293404 | ENA

Pig Longissimus muscle: comparison between Basque and Large White breeds

Project description:Transcriptional profiling of pig skeletal muscle comparing two divergent breeds: Large white (LW, conventional) and Basque (B, local, indigeneous). Two-condition experiment, LW vs. B muscles. Biological replicates: 20 B and 20 LW. One replicate per array.

2012-11-20 | E-GEOD-26614 | biostudies-arrayexpress

Pig adipose tissue: comparison between Basque and Large White breeds

Project description:Transcriptional profiling of pig adipose tissue comparing two divergent breeds: Large white (LW, conventional) and Basque (B, local, indigeneous). Four-condition experiment, LW vs. B muscles at 35 kg and 145 kg live weight. Biological replicates: at 145 kg, 10 B and 10 LW; at 35 kg 5 B and 5 LW. One replicate per array.

2012-12-03 | E-GEOD-34161 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data