Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Multiple barcoding of soil microbial eukaryotes

ABSTRACT: Effects of long term differential fertilization on microbial eukaryotic community of an arable soil: a multiple barcoding approach

PROVIDER: PRJEB5170 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Eukaryotes

Project description:Protistan community under effects of antibiotics in an arable soil.

| PRJNA780229 | ENA

A study to investigate the effects of long-term organic and integrated fertilization on soil microbial community

Project description:Microbes play key roles in diverse biogeochemical processes including nutrient cycling. However, responses of soil microbial community at the functional gene level to long-term fertilization, especially integrated fertilization (chemical combined with organic fertilization) remain unclear. Here we used microarray-based GeoChip techniques to explore the shifts of soil microbial functional community in a nutrient-poor paddy soil with long-term (21 years).The long-term fertilization experiment site (set up in 1990) was located in Taoyuan agro-ecosystem research station (28°55’N, 111°27’E), Chinese Academy of Sciences, Hunan Province, China, with a double-cropped rice system. fertilization at various regimes.

2020-09-19 | GSE104014 | GEO

MinION barcoding

Project description:MinION DNA barcoding wildlife samples

| PRJEB36404 | ENA

COL1A2 Barcoding: Bone Species Identification via Shotgun Proteomics

Project description:Species identification of fragmentary bones remains a challenging task in archeology and forensics. A species identification method for such fragmentary bones that has recently attracted interest is the use of bone collagen proteins. We developed a method similar to DNA barcoding that reads collagen protein sequences in bone and automatically determines the species by performing sequence database searches. We tested our method using bone samples from 30 vertebrate species ranging from mammals to fish.

2023-12-14 | PXD045402 | Pride

Diversity of deep microbial eukaryotes

Project description:Large variability of bathypelagic microbial eukaryotic communities across the world's oceans

| PRJEB9943 | ENA

microbial eukaryotes

Project description:protist

| PRJNA430302 | ENA

microbial eukaryotes

Project description:Labyrinthula spp. from seagrass blades

| PRJNA575863 | ENA

Droplet barcoding for single cell transcriptomics applied to embryonic stem cells

Project description:Recently, RNA sequencing has achieved single cell resolution, but what is limiting is an effective way to routinely isolate and process large numbers of individual cells for in-depth sequencing, and to do so quantitatively. We have developed a droplet-microfluidic approach for parallel barcoding thousands of individual cells for subsequent RNA profiling by next-generation sequencing. This high-throughput method shows a surprisingly low noise profile and is readily adaptable to other sequencing-based assays. Using this technique, we analyzed mouse embryonic stem cells, revealing in detail the population structure and the heterogeneous onset of differentiation after LIF withdrawal. The reproducibility and low noise of this high-throughput single cell data allowed us to deconstruct cell populations and infer gene expression relationships. A total of 8 single cell data sets are submitted: 3 for mouse embryonic stem (ES) cells (1 biological replicate, 2 technical replicates); 3 samples following LIF withdrawal (days 2,4, 7); one pure RNA data set (from human lymphoblast K562 cells); and one sample of single K562 cells.

2015-05-20 | E-GEOD-65525 | biostudies-arrayexpress

Microbial single-cell RNA sequencing by split-pool barcoding

Project description:Microbial single-cell RNA sequencing by split-pool barcoding

| PRJNA637771 | ENA

Dual-index pollen meta-barcoding

Project description:Increased throughput for meta-barcoding of mixed pollen samples using a dual-index approach with the Illumina MiSeq platform

| PRJEB8640 | ENA