Ceratotherium simum simum
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA242272 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| Other | ||||
| AKZM01.dat.gz | Other | |||
| AKZM01.fasta.gz | Fasta.gz | |||
| AKZM01.master.dat | Other | |||
| SRR354028_1.fastq.gz | Fastqsanger.gz |
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Project description:Efforts to implement effective assisted reproductive technologies (ART) to extricate the northern white rhinoceros (NWR; Ceratotherium simum cottoni) from extinction, could be unconventionally offset from studies carried out using the southern white rhinoceros (Ceratotherium simum simum) as a relative model species. The bi-directional communication and critical transport of regulatory molecules controlling follicular growth and oocyte development are in part mediated through extracellular vesicles (EVs), which encompass a highly conserved and advanced paracrine signaling mechanism important in shuttling unique cargo such as microRNAs (miRNAs). In this study, critical miRNAs for follicular development were identified, proposing novel approaches using EV-mediated miRNA to possibly improve the in vitro technologies outcome in a multitude of species.
2024-05-30 | GSE246260 | GEO
Project description:Ceratotherium simum cottoni (southern white rhinoceros)
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Project description:In vivo-collected granulosa cells (GC) from the southern white rhinoceros (SWR) provide a non-invasive assessment of the developmental status of oocytes prior to in vitro culture, which will aid in the development of assisted reproductive technologies (ART). Our study aimed to investigate gene expression in SWR granulosa cells (GC), collected in vivo and gain preliminary insight into the transcriptional activity occurring within the cells during various stages of oocyte development. It was hypothesized there would be similarities between the SWR GC transcriptome and cattle and humans, two species for which well-annotated genomes are available and ART are commonly used. GC were collected from SWR following ovum pickup (OPU) and pooled from all aspirated follicles. Total RNA was isolated, libraries prepared and sequencing performed using an Illumina NextSeq 500. Reads were aligned and annotated to CerSimCot1.0. Databases for cattle and human were acquired for comparison. This study identified 37,407 transcripts present in GC of SWR. It was determined that cattle and human transcriptomes are valuable resources with a homology of 45% with the SWR. In conclusion, these data provide preliminary, novel insights into the transcriptional activity of GC in the SWR that can be used to enhance ART in this species.
2023-05-11 | GSE216035 | GEO
Project description:Ceratotherium simum simum Genome sequencing and assembly
| PRJNA74583 | ENA
Project description:All species in the extant Rhinocerotidae family are experiencing increased threats in the wild, making captive populations essential genetic reservoirs for species survival. However, managed species face distinct challenges in captivity, resulting in populations that are not self-sustaining. Captive southern white rhinoceros (Ceratotherium simum simum) have low reproductive rates and presumed acyclicity is common among females. Although many females fail to ovulate, follicle growth may occur and ovulation can be hormonally induced. Female southern white rhino (n = 6), housed as a bachelorette group, were determined to be ovulatory (n = 1) or anovulatory (n = 5) by serial ultrasound and fecal progestagen analysis. When follicles reached pre-ovulatory size (~35 mm), females (n = 4) were induced to ovulate in 11 trials with a GnRH analog (4.5 mg, SucroMate™) via single intramuscular injection. Nine trials resulted in ovulation (81.8%), all between 36 and 48 hours post-treatment. Ovulations were confirmed by progestagen elevation above baseline coincident with visualization of a corpus luteum (CL). Luteal phases were characterized as short (<50 days) or long (≥50 days). Between short and long cycles, only the number of days of progestagen above baseline was significantly different (P < 0.05), while days with visible luteal structures was not significant (P = 0.11). Both cycle types were observed following both spontaneous and induced ovulations. Furthermore, we showed that longer cycle lengths do not necessarily indicate early pregnancy loss as none of the females were bred or inseminated during the study. While anovulation is common in the southern white rhino captive population, ovulation induction can be achieved efficiently and predictably for use in conjunction with artificial insemination or to facilitate natural breeding. This information will lead to more efficient use of assisted reproductive technologies to overcome reproductive challenges in this species and to generate genetically healthy captive populations as a hedge against extinction.
| S-EPMC6589769 | biostudies-literature
Project description:Investigation of globulin fractions by serum protein electrophoresis (SPE) is the first step towards evaluation of the proteome in the southern white rhinoceros (Ceratotherium simum simum). Furthermore, identification of changes in globulins in animals with poaching and other injuries can guide discovery of potentially useful biomarkers of inflammation. The aim of this study was to develop reference intervals for agarose gel SPE in healthy white rhinoceros and to compare these serum protein electrophoresis results to those from animals with tissue trauma. Reference intervals for total serum protein and agarose gel electrophoretic albumin and globulin fractions were generated using serum samples from 49 healthy free-ranging adult white rhinoceros. A standardised gating system together with identification of specific proteins by mass spectrometry aided in fraction identification. Six globulin fractions were identified: ?1a, ?1b, ?2, ?1, ?2 and ?. Reference intervals were generated for total serum protein (76-111 g/L), albumin (10-27 g/L) and globulin fractions (?1a: 1.6-3.2 g/L; ?1b: 1.7-3.6 g/L; ?2: 16.1-26.6 g/L; ?1: 6.6-18.2 g/L; ?2: 11.8-30.4 g/L; ?: 10.4-23.1 g/L; albumin: globulin ratio: 0.12-0.39). Results were compared to those from 30 animals with various degrees and chronicities of tissue trauma. Wounded animals had lower concentrations of total serum protein, albumin, total globulin, ? and ?1 globulins, lower percentages of ?2 and ?1 globulins, and higher percentages of ?2 and ? globulins. These protein changes are similar to those seen in human patients with wounds rather than classic acute phase or chronic inflammatory responses.
| S-EPMC6059428 | biostudies-literature
Project description:Individual distinctiveness in the acoustic structure of vocalizations provides a basis for individual recognition in mammals and plays an important role in social behavior. Within a species, call types can differ in individual distinctiveness, which can be explained by three factors, namely differences in the social function, the distance of the caller to the receiver, and the acoustic structure of the call. We explored the variation in individual distinctiveness across three call types (Grunt, Hiss, Snort) of the southern white rhinoceros (Ceratotherium simum simum) and investigated to what extent the abovementioned factors account for individual distinctiveness. Calls were recorded from 25 adult southern white rhinoceroses in six different zoos. We used three methods to compare the level of individual distinctiveness across call types, namely discriminant function analysis (DFA), potential for individual identity coding (PIC), and the information criterion (Hs). The three call types possessed an acoustic structure capable of showing individual variation to different extents. Individual distinctiveness was lowest for Snorts, intermediate for Hisses, and highest for Grunts. The level of individual distinctiveness of all three call types was lower than that previously reported for Pant calls of this species. Calls functioning to mediate intragroup social interactions had the highest individual distinctiveness. This highlights that a given communicative function and the need for individual discrimination during a social interaction have a major influence on the degree of individual distinctiveness.
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