Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Papio cynocephalus

ABSTRACT: Comparing Reference-Based RNA-Seq Mapping Methods for Non-Human Primate Data

PROVIDER: PRJNA246538 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1282070_1.fastq.gz	Fastqsanger.gz
	SRR1282070_2.fastq.gz	Fastqsanger.gz
	SRR1282071_1.fastq.gz	Fastqsanger.gz
	SRR1282071_2.fastq.gz	Fastqsanger.gz
	SRR1282072_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Papio cynocephalus

Project description:Gene expression data from compstatin treated E.coli-Induced primate sepsis model

| PRJNA129977 | ENA

Comparing Reference-Based RNA-Seq Mapping Methods for Non-Human Primate Data

Project description:We present a comparison of four reference-based mapping methods for mapping non-human primate data to a human reference sequence. We utilize TopHat2 and GSNAP for mapping to the human genome, and Bowtie2 and Stampy for mapping to the human genome and transcriptome for a total of six mapping approaches Comparison of reference-based mapping methods for 12 yellow baboons

2014-07-10 | E-GEOD-57485 | biostudies-arrayexpress

Comparing Reference-Based RNA-Seq Mapping Methods for Non-Human Primate Data

2014-07-10 | GSE57485 | GEO

Papio anubis Transcriptome or Gene expression

Project description:This data set consists of tissue-specific RNA-seq reads from 14 different tissues from a single female adult olive baboon (Papio anubis): bone marrow, brain cerebellum, brain frontal cortex, brain pituitary, brain temporal lobe, colon, heart, kidney, liver, lymph node, spleen, lung, skeletal muscle and thymus. The data set was generated by the non-human primate reference transcriptome resource (NHPRTR) project (http://nhprtr.org/), and was first made public on 14 Jan 2014.

2013-12-09 | E-MTAB-2848 | biostudies-arrayexpress

Papio cynocephalus

Project description:The yellow baboon is a monkey that inhabits the savannas and light forests of eastern Africa

| PRJNA56031 | ENA

Papio cynocephalus

Project description:The Genetic Architecture of Gene Expression Levels in Wild Baboons

| PRJNA269070 | ENA

Papio cynocephalus

Project description:Papio cynocephalus Targeted Locus (Loci)

| PRJNA190059 | ENA

Papio cynocephalus

Project description:Papio cynocephalus Epigenomics

| PRJNA283632 | ENA

Papio cynocephalus

Project description:Papio cynocephalus genome sequencing project.

| PRJNA54007 | ENA

Resource base influences genome-wide DNA methylation levels in wild baboons (Papio cynocephalus).

Project description:Variation in resource availability commonly exerts strong effects on fitness-related traits in wild animals. However, we know little about the molecular mechanisms that mediate these effects, or about their persistence over time. To address these questions, we profiled genome-wide whole-blood DNA methylation levels in two sets of wild baboons: (i) 'wild-feeding' baboons that foraged naturally in a savanna environment and (ii) 'Lodge' baboons that had ready access to spatially concentrated human food scraps, resulting in high feeding efficiency and low daily travel distances. We identified 1014 sites (0.20% of sites tested) that were differentially methylated between wild-feeding and Lodge baboons, providing the first evidence that resource availability shapes the epigenome in a wild mammal. Differentially methylated sites tended to occur in contiguous stretches (i.e., in differentially methylated regions or DMRs), in promoters and enhancers, and near metabolism-related genes, supporting their functional importance in gene regulation. In agreement, reporter assay experiments confirmed that methylation at the largest identified DMR, located in the promoter of a key glycolysis-related gene, was sufficient to causally drive changes in gene expression. Intriguingly, all dispersing males carried a consistent epigenetic signature of their membership in a wild-feeding group, regardless of whether males dispersed into or out of this group as adults. Together, our findings support a role for DNA methylation in mediating ecological effects on phenotypic traits in the wild and emphasize the dynamic environmental sensitivity of DNA methylation levels across the life course.

| S-EPMC4846536 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data