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Solanum

ABSTRACT: Sequencing of Solanum herbarium specimens.

PROVIDER: PRJNA248063 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR1291240.fastq.gz	Fastqsanger.gz
	SRR1291240_1.fastq.gz	Fastqsanger.gz
	SRR1291240_2.fastq.gz	Fastqsanger.gz
	SRR1291241.fastq.gz	Fastqsanger.gz
	SRR1291241_1.fastq.gz	Fastqsanger.gz

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microRNA-target RNA pairs revealed by Parallel analysis of RNA ends in Solanum lycopersicum

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Project description:Solanum torvum Sw is worldwide employed as rootstock for eggplant cultivation because of its vigour and resistance/tolerance to the most serious soil-borne diseasesas bacterial, fungal wilts and root-knot nematodes. A 30,0000 features custom combimatrix chip was designed and microarray hybridizations were conducted for both control and 14 dpi (day post inoculation) with Meloidogyne incognita-infected roots samples. We also tested the chip with samples from the phylogenetically-related nematode-susceptible eggplant species Solanum melongena.The genes identified from S. torvum catalogue, bearing high homology to knownnematode resistance genes, were further investigated in view of their potential role in the nematode resistance mechanism. total RNA was extracted from control and 14 days post-infection (infection with root-knot nematode Meloidogyne incognita) from roots of Solanum torvum and Solanum melongena. Three biological replicates were used for each condition and genotype for a total of 12 samples.

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