Amia calva
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA255850 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Amia calva isolate:single male individual (Calvin) Genome sequencing and assembly
| PRJNA417081 | ENA
Project description:Candidatus Paraburkholderia calva strain:UZHbot6 Genome sequencing and assembly
| PRJNA253361 | ENA
Project description:How modification of gene expression generates novel traits is key to understanding the evolutionary process. Here we investigated the genetic basis for the origin of the piscine gas bladder from lungs of ancestral bony vertebrates. Distinguishing these homologous organs is the direction of budding from the foregut during development; lungs bud ventrally and the gas bladder buds dorsally. We investigated whether this morphological inversion is associated with the molecular inversion of conserved genes regulating lung and gas bladder development. Using laser-capture microdissection and RNA-seq, we assayed transcript abundance and compared expression patterns between dorsal and ventral foregut tissues at three developmental stages spanning gasbladder development. Our focal taxon, bowfin (Amia calva), representing the sistergroup to teleosts, is an early diverging ray-finned fish with a gas bladder. We discovered a number of genes with unknown function during lung development that are differentially expressed during gas bladder development and annotated to functions relevant for organ budding. We also identified several known lung-regulatory genes that exhibit inverted dorsoventral expression during gasbladder development relative to lung development. In particular, we found Tbx5 is strongly expressed in the dorsal mesoderm surrounding the gas bladder during bowfin development, and several interacting genes are co-expressed dorsally with Tbx5. In contrast, in mouse and bichir (Polypterus senegalus), the only ray-finned fish that have lungs, Tbx5 is expressed in the ventral lung mesoderm during lung development. Our data demonstrating dorsoventral inversion of conserved genes suggest that these genes may have contributed to the evolutionary transition between ventral lungs and a dorsal gas bladder in ray-finned fishes.
2021-05-12 | GSE152992 | GEO
Project description:The species of the Neoserica(sensu lato)calva group are revised. Neosericacalva Frey, 1972, comb. n. is redescribed. Thirteen new species are described from China and South Korea: Neosericaailaoshanica sp. n., Neosericaanonyma sp. n., Neosericacalvoides sp. n., Neosericagulinqingensis sp. n., Neosericakoelkebecki sp. n., Neosericaliangi sp. n., Neosericaluxiensis sp. n., Neosericamenghaiensis sp. n., Neosericamengi sp. n., Neosericataipingensis sp. n., Neosericazheijangensis sp. n., Neosericazhibenshanica sp. n., and Neosericazongyuani sp. n. A key to Sericini genera with multilamellate antenna and species groups of Neoserica of mainland Asia as well as a key to species of the Neosericacalva group are provided. A map of species distribution is given, habitus and male genitalia are illustrated.
| S-EPMC4233394 | biostudies-literature
Project description:dataset to create a peptide candidate list of E. coli peptides bound to either AliB or AmiA from Streptococcus pneumoniae.
2023-08-23 | MSV000092727 | MassIVE
Project description:The holostean fishes are the extant representatives of the primitive ray-finned fishes from which the present-day teleosts may have evolved. The primary structure of insulin from a holostean fish, the bowfin (Amia calva), was established as: A-chain: Gly-Ile-Val-Glu-Gln-Cys-Cys-Leu-Lys-Pro-Cys-Thr-Ile-Tyr-Glu-Met-Glu- Lys-Tyr-Cys-Asn B-chain: Ala-Ala-Ser-Gln-His-Leu-Cys-Gly-Ser-His-Leu-Val-Glu-Ala-Leu-Phe-Leu- Val-Cys-Gly-Glu-Ser-Gly-Phe-Phe-Tyr-Asn-Pro-Asn-Lys-Ser This amino acid sequence contains several substitutions (methionine at A16, phenylalanine at B16 and serine at B22) at sites that have been strongly conserved in other vertebrate species and that may be expected to influence biological activity. Consistent with this prediction, bowfin insulin was approx. 14-fold less potent than pig insulin in inhibiting the binding of [125I-Tyr-A14](human insulin) to transfected mouse NIH 3T3 cells expressing the human insulin receptor.
| S-EPMC1151174 | biostudies-other