Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Burkholderia plantarii strain:PG1

ABSTRACT: RNASeq of Burkholderia glumae PG1 Quorum Sensing Mutants

PROVIDER: PRJNA258200 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1589641.fastq.gz	Fastqsanger.gz
	SRR1588514.fastq.gz	Fastqsanger.gz
	SRR1588515.fastq.gz	Fastqsanger.gz
	SRR1589598.fastq.gz	Fastqsanger.gz
	SRR1589618.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Burkholderia plantarii strain:PG1

Project description:Burkholderia plantarii strain:PG1 Genome sequencing

| PRJNA33837 | ENA

RNA-Seq analysis of quorum sensing-dependent genes in Burkholderia glumae BGR1

Project description:Burkholderia glumae causes rice grain rot and sheath rot by producing toxoflavin, whose expression is regulated by quorum sensing (QS). The QS systems of the bacterium rely on N-octanoyl homoserine lactone, synthesized by TofI and its cognate receptor TofR, to activate toxoflavin biosynthesis genes and an IclR-type transcriptional regulator gene, qsmR. To understand genome-wide transcriptional profiling of QS signaling, we employed RNA-Seq of the wild type Burkholderia glumae BGR1 and two QS-defective mutants, BGS2 (BGR1 tofI::Ω) and BGS9 (BGR1 qsmR::Ω), with two different types of culture conditions including 6hr liquid culture (before onset QS) and 10hr liquid culture (after onset QS). 3 samples examined: Burkholderia glumae BGR1 wild type, and two QS-defective mutants, BGS2 (BGR1 tofI::Ω) and BGS9 (BGR1 qsmR::Ω). Two conditions: cultured in LB media for 6hrs or 10hrs.

2012-03-14 | E-GEOD-36485 | biostudies-arrayexpress

RNA-Seq analysis of quorum sensing-dependent genes in Burkholderia glumae BGR1

2012-03-14 | GSE36485 | GEO

Burkholderia glumae

Project description:RNA-Seq analysis of quorum sensing-dependent genes in Burkholderia glumae BGR1

| PRJNA153523 | ENA

Burkholderia

Project description:Quorum sensing regulon of Burkholderia pseudomallei and Burkholderia mallei

| PRJNA241448 | ENA

Burkholderia thailandensis E264 proteome and its changes upon quorum sensing disruption

Project description:The proteome of Burkholderia thailandensis E264 was assessed by shotgun proteomics as well as the proteome of the strain after quorum sensing disruption.

2023-06-09 | PXD040565 | Pride

RNAseq analyses of pathogenic Burkholderia glumae under in vitro and in vivo conditions

Project description:We analyzed B. glumae transcriptome from infected rice tissue using an RNAseq technique. To identify unique expression of B. glumae genes within rice tissues, we compared in vivo transcriptome data of B. glumae to in vitro data. To accomplish this, we analyzed differentially expressed genes (DEGs) and identified 2,906 transcripts that were significantly altered.

2014-08-21 | GSE56958 | GEO

RNAseq analyses of pathogenic Burkholderia glumae under in vitro and in vivo conditions

2014-08-21 | E-GEOD-56958 | biostudies-arrayexpress

Burkholderia plantarii

Project description:Burkholderia plantarii overview

| PRJNA49585 | ENA

Transcriptome analyses of toxoflavin-dependent genes in Fusarium graminearum wild-type GZ03639 and toxoflavin-sensitive mutants

Project description:Bacterial pathogen Burkholderia glumae and fungal pathogen Fusarium graminearum cause similar disease symptoms and often co-isolated from rice heads, inferring interactions between the two pathogens. F. graminearum is resistant to the bacterial toxin toxoflavin, a strong anti-microbial activity, produced by B. glumae. We isolated toxoflavin-sensitive mutants from transcription factor deletion mutant library of F. graminearum. To understand genome-wide transcriptional profiling, we performed RNA-seq analyses of F. graminearum wild-type strain GZ03639 and toxoflavin-sensitive mutant strains (∆GzZC190, ∆GzC2H008, ∆GzbZIP005) under toxoflavin condition.

2018-02-16 | GSE104623 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data