Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Symbiodinium microadriaticum strain:CCMP2467

ABSTRACT: Symbiodinium microadriaticum strain:CCMP2467 Genome sequencing and assembly

PROVIDER: PRJNA292355 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	LSRX01.dat.gz	Other
	LSRX01.fasta.gz	Fasta.gz
	LSRX01.master.dat	Other
	SRR2924970_1.fastq.gz	Fastqsanger.gz
	SRR2924970_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 34

Similar Datasets

Chromosome-scale assembly of the Symbiodinium microadriaticum genome

Project description:Hi-C assisted genome assembly of the Symbiodinium microadriaticum genome

2021-02-12 | GSE152150 | GEO

Symbiodinium microadriaticum

Project description:Symbiodinium microadriaticum overview

| PRJNA379189 | ENA

Symbiodinium microadriaticum

Project description:whole genome sequencing of Symbiodinium microadriaticum

| PRJDB8520 | ENA

Symbiodinium microadriaticum strain:CCMP2467

Project description:Symbiodinium microadriaticum RNAseq

| PRJNA315758 | ENA

Symbiodinium microadriaticum strain:CCMP2467

Project description:Epigenetic changes in Symbiodinium microadriaticum in response to long-term temperature stress

| PRJNA454796 | ENA

Chromosome-scale assembly of the Symbiodinium microadriaticum genome

Project description:Chromosome-scale assembly of the Symbiodinium microadriaticum genome

| PRJNA638417 | ENA

The proteomic response of the coral symbiont Symbiodinium microadriaticum to thermal and nutrient stress

Project description:Abstract The coral–dinoflagellate symbiosis is increasingly disrupted by global and local anthropogenic stressors. Coral bleaching is primarily a result of high sea surface temperatures, while eutrophication is associated with reef ecosystem degradation. Excess inorganic nitrogen relative to phosphate has been proposed to directly sensitise corals to thermal bleaching and accelerate reef decline. We assessed the proteomic response of the dinoflagellate coral symbiont Symbiodinium microadriaticum to elevated temperatures under multiple nutrient conditions by mass spectrometry. Elevated temperatures resulted in reductions of many chloroplast proteins, particularly light-harvesting complexes, with simultaneous increases in chaperone proteins. N:P imbalance had a larger effect on the proteome than temperature, but the biological processes and proteins responding to each stressor largely overlapped. The proteomes were highly similar at low N:P ratios but were strongly affected by phosphate starvation. High N:P ratios inhibited cell division, reflected by changes in proteins involved in protein translation. Imbalanced N:P did not increase sensitivity to high temperatures as measured by physiological means; however, imbalanced N:P strongly upregulated cell redox homeostasis proteins at high temperatures. As redox balance is critical during thermal bleaching, these data provide insight into the mechanisms of cellular responses to thermal and multiple stresses in the coral–dinoflagellate symbiosis.

2023-01-31 | PXD022821 | Pride

The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome

Project description:Despite the ecological significance of the relationship between reef-building corals and intracellular photosynthetic dinoflagellates of the genus Symbiodinium, very little is known about the molecular mechanisms involved in the establishment of the relationship. Indeed, microarray-based analyses point to the conclusion that host gene expression is largely or completely unresponsive during the establishment of symbiosis with a competent strain of Symbiodinium. In the present study, the use of Illumina RNAseq technology allowed detection of a transient period of differential expression involving a small number of genes (1073 transcripts; <3% of the transcriptome) 4h after the exposure of Acropora digitifera planulae to a competent strain of Symbiodinium (a clade B strain). This phenomenon has not previously been detected as a consequence of both the lower sensitivity of the microarray approaches used and the sampling times used. The results imply that complex changes occur, including transient suppression of mitochondrial metabolism and protein synthesis, but are also consistent with the hypothesis that the symbiosome is a phagosome that has undergone early arrest, raising the possibility of common mechanisms in the symbiotic interactions of corals and symbiotic sea anemones with their endosymbionts.

2016-04-03 | GSE76976 | GEO

The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome

2016-04-03 | E-GEOD-76976 | biostudies-arrayexpress

Symbiodinium kawagutii strain:CCMP2468

Project description:Symbiodinium kawagutii strain:CCMP2468 Genome sequencing

| PRJNA242224 | ENA