Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudozyma tsukubaensis strain:NBRC 1940

ABSTRACT: Pseudozyma tsukubaensis strain:NBRC 1940 Genome sequencing and assembly

PROVIDER: PRJNA325852 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	MAIP01.dat.gz	Other
	MAIP01.fasta.gz	Fasta.gz
	MAIP01.master.dat	Other
	MAIP01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Pseudozyma hubeiensis strain:NBRC 105055

Project description:Pseudozyma hubeiensis strain:NBRC 105055 Genome sequencing and assembly

| PRJNA325851 | ENA

Expression analysis of Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant

Project description:Investigation of whole genome gene expression level changes in a Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant, compared to the wild-type strain.

2021-07-16 | GSE41775 | GEO

Expression analysis of Pseudozyma antarctica T-34 and Ustilago maydis on different carbon source

Project description:Investigation of whole genome gene expression level in Pseudozyma antarctica T-34, compared to Ustilago maydis UM521. To clarify the transcriptomic characteristics of Pseudozyma antarctica under the conditions of high MEL production, a DNA microarray of both the strains, Pseudozyma antarctica T-34 and Ustilago maydis UM521 was prepared and analyzed the transcriptomes. A DNA chip study using mRNA from the cultures of Pseudozyma antarctica T-34 and Ustilago maydis UM521 demonstrated the gene expression level of each strain.

2014-03-21 | E-GEOD-47171 | biostudies-arrayexpress

Expression analysis of Pseudozyma antarctica T-34 and Ustilago maydis on different carbon source

2014-03-21 | GSE47171 | GEO

Pseudozyma sp. NJ7

Project description:Pseudozyma sp. NJ7 Assembly

| PRJNA406862 | ENA

Identifying SigG1 binding sites in Streptomyces tsukubaensis

Project description:The aim of this work was to determine where SigG1 binds within the S. tsukubaensis chromosome

2020-12-21 | GSE144907 | GEO

Streptomyces tsukubaensis: transcriptomic response to tacrolimus repressing carbon sources

Project description:In this work, we identified glucose and glycerol as tacrolimus repressing carbon sources in the important species Streptomyces tsukubaensis. A genome-wide analysis of the transcriptomic response to glucose and glycerol additions was performed using microarray technology. The transcriptional time series obtained allowed us to compare the transcriptomic profiling of S. tsukubaensis growing under tacrolimus producing and non-producing conditions. The analysis revealed important and different metabolic changes after the additions and a lack of transcriptional activation of the fkb cluster. In addition, we detected important differences in the transcriptional response to glucose between S. tsukubaensis and the model species Streptomyces coelicolor. A number of genes encoding key players of morphological and biochemical differentiation were strongly and permanently downregulated by the carbon sources. Finally, we identified several genes showing transcriptional profiles highly correlated to that of the tacrolimus biosynthetic pathway regulator FkbN that might be potential candidates for the improvement of tacrolimus production

2017-10-12 | GSE99752 | GEO

Pseudozyma hubeiensis GHG001

Project description:Pseudozyma hubeiensis GHG001 Genome sequencing

| PRJNA211966 | ENA

Pseudozyma hubeiensis

Project description:Draft genome sequencing of Pseudozyma hubeiensis SY62

| PRJDB1818 | ENA

Transcriptome analysis of Bacillus subtilis NBRC 16449 grown on surface of boiled soybeans under the similar condition to production of Japanese traditional soybean-fermented food "natto"

Project description:Purpose:The goals of this study are to clarify the B. subtilis NBRC 16449 response to soybeans. Methods: B. subtilis NBRC 16449 cells were aerobically cultured in liquid LB, LB solidified with agar, or on surface of boiled soybeans to logarithmic growth phase. Total RNAs were extracted from bacterial cells by Hot-Phenol method. Samples for RNA-seq were prepared according to Illmina protocol available from the manufacture. The sequence reads that passed quality filters were analyzed at the transcript isoform level with bowtie v0.11.2. Results: Using an optimized data analysis workflow, we mapped around 15 million sequence reads per sample to the whole genome of B. subtilis BEST195 and identified 4271 transcripts in B. subtilis NBRC 16449 with Bowtie aligner. Read count per genome was extracted from known gene annotations with HTSeq program. Compared the transcriptomes of B. subtilis NBRC 16449 grown on LB solidified with agar to that grown on surface of boiled soybeans, about 5% of genes showed the different expression levels.

2020-11-02 | GSE109523 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data