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Expression analysis of Pseudozyma antarctica T-34 and Ustilago maydis on different carbon source

ABSTRACT: Investigation of whole genome gene expression level in Pseudozyma antarctica T-34, compared to Ustilago maydis UM521. To clarify the transcriptomic characteristics of Pseudozyma antarctica under the conditions of high MEL production, a DNA microarray of both the strains, Pseudozyma antarctica T-34 and Ustilago maydis UM521 was prepared and analyzed the transcriptomes. A DNA chip study using mRNA from the cultures of Pseudozyma antarctica T-34 and Ustilago maydis UM521 demonstrated the gene expression level of each strain.

ORGANISM(S): Ustilago maydis 521

SUBMITTER: Hideaki Koike 

PROVIDER: E-GEOD-47171 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Genome and transcriptome analysis of the basidiomycetous yeast Pseudozyma antarctica producing extracellular glycolipids, mannosylerythritol lipids.

Morita Tomotake T   Koike Hideaki H   Hagiwara Hiroko H   Ito Emi E   Machida Masayuki M   Sato Shun S   Habe Hiroshi H   Kitamoto Dai D  

PloS one 20140224 2

Pseudozyma antarctica is a non-pathogenic phyllosphere yeast known as an excellent producer of mannosylerythritol lipids (MELs), multi-functional extracellular glycolipids, from vegetable oils. To clarify the genetic characteristics of P. antarctica, we analyzed the 18 Mb genome of P. antarctica T-34. On the basis of KOG analysis, the number of genes (219 genes) categorized into lipid transport and metabolism classification in P. antarctica was one and a half times larger than that of yeast Sacc  ...[more]

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