Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Epibiont metagenome

ABSTRACT: epibiont metagenome Raw sequence reads

PROVIDER: PRJNA330990 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6490001_1.fastq.gz	Fastqsanger.gz
	SRR6490001_2.fastq.gz	Fastqsanger.gz
	SRR6490002_1.fastq.gz	Fastqsanger.gz
	SRR6490002_2.fastq.gz	Fastqsanger.gz
	SRR6490003_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

epibiont metagenome

Project description:epibiont metagenome Raw sequence reads

| PRJNA318829 | ENA

epibiont metagenome

Project description:epibiont metagenome Genome sequencing and assembly

| PRJNA479708 | ENA

epibiont metagenome

Project description:Hydrothermal vent epibiont community associated with Alvinella pompejana

| PRJNA17241 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

epibiont metagenome

Project description:Epiphytic bacteria of Gralilaria lemaneiformis Raw sequence reads

| PRJNA543182 | ENA

Project description:EMG produced TPA metagenomics assembly of the epibiont metagenome Raw sequence reads (epibiont metagenome) data set.

| PRJEB29606 | ENA

Transcriptome of epibiont Saccharibacteria TM7x during establishment of symbiosis on host Schaalia odontolyticus strain XH001

Project description:Nanosynbacter lyticus type strain TM7x was the first cultivated member of the broadly prevelent, but poorly udnerstood Candidate Phylum Radiation super-phylum. TM7x was shown to be an obligate epibiont with a host range including Schaalia odontolyticus strain XH001. The process of infecting a naive host goes through multiple phases, from an initial binding and interaction phase we call the initial encounter, to a rapid die off of infected host cells, killing phase, followed by regrowth of the host cells, regrowth phase, and finally a stable symbiosis between the species, stable symbiosis.To obtain a better understanding of the process by which these species establish a stable symbiosis, we measured the transcriptome using RNA sequencing across the course of infection. We sampled infected host, XH001/TM7x, during the initial interaction, regrowth, and after attaining stable symbiosis, as well as naive host controls grown under the same culture conditions.

2022-07-18 | GSE196744 | GEO

LC-MS/MS of autotrophic culture KS, that performs nitrate reduction coupled to iron(II) oxidation (NDFO)

Project description:Nitrate-reducing iron(II)-oxidizing bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorly understood. The most prominent model system for this type of studies is enrichment culture KS, which originates from a freshwater sediment in Bremen, Germany. To gain insights in the metabolism of nitrate reduction coupled to iron(II) oxidation under in the absence of organic carbon and oxygen limited conditions, we performed metagenomic, metatranscriptomic and metaproteomic analyses of culture KS. Raw sequencing data of 16S rRNA amplicon sequencing, shotgun metagenomics (short reads: Illumina; long reads: Oxford Nanopore Technologies), metagenome assembly, raw sequencing data of shotgun metatranscriptomes (2 conditions, triplicates) can be found at SRA in https://www.ncbi.nlm.nih.gov/bioproject/PRJNA682552. This dataset contains proteomics data for 2 conditions (heterotrophic and autotrophic growth conditions) in triplicates.

2021-05-17 | PXD023186 | Pride

Metagenome-Assembled Genome of a Novel <i>Cyclobacteriaceae</i> Epibiont of a Heterotrophic Diazotroph.

Project description:Here, we describe the metagenome-assembled genome (MAG) HetDA_MAG_SS2, in the family Cyclobacteriaceae. It was found in association with a HetDA cyanobiont isolated from a Station ALOHA Trichodesmium colony. Annotation suggests that HetDA_MAG_SS2 is a chemoorganoheterotroph with the potential for lithoheterotrophy, containing genes for aerobic respiration, mixed acid fermentation, dissimilatory nitrate reduction to ammonium, and sulfide oxidation.

| S-EPMC9933675 | biostudies-literature

epibiont metagenome

Project description:Cladophora sp. Metagenome

| PRJNA267502 | ENA