Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lineolata rhizophorae strain:ATCC 16933 | isolate:ATCC 16933

ABSTRACT: Lineolata rhizophorae ATCC16933 Standard Draft genome sequencing

PROVIDER: PRJNA334192 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4144055_1.fastq.gz	Fastqsanger.gz
	SRR4144055_2.fastq.gz	Fastqsanger.gz
	SRR4144056_1.fastq.gz	Fastqsanger.gz
	SRR4144056_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Lineolata rhizophorae strain:ATCC 16933 | isolate:ATCC 16933

Project description:Lineolata rhizophorae ATCC16933 Transcriptome

| PRJNA372851 | ENA

Batocera lineolata

Project description:Batocera lineolata overview

| PRJNA734390 | ENA

Lineolata rhizophorae

Project description:Lineolata rhizophorae overview

| PRJNA373770 | ENA

Sepioloidea lineolata MSMS

Project description:Sepioloidea lineolata, the striped pyjama squid (family Sepiadariidae), is a small species of benthic squid distributed along the Southern Indo-Pacific coast of Australia. All sepiadariid squids are known to secrete large volumes of viscous slime when stressed. The proteome of S. lineolata slime was analysed by combining high resolution mass spectrometry data with an S. lineolata transcriptome assembled from five tissues including slime. The composition of S. lineolata slime was also compared to that of the closely related S. austrinum (southern bottletail squid). Of the 550 protein groups identified in S. lineolata slime, 321 had orthologs in S. austrinum, and the abundance of these (iBAQ) was highly correlated between species. Both slimes were dominated by a small number of highly abundant proteins and several of these were short secreted proteins that had no homologues outside the class Cephalopoda. The extent of N-glycosylation in the slime of S. lineolata was also studied via glycan cleavage with PNGase-F. Four proteins had strong evidence of N-glycosylated, with treatment with PNGase-F showing a slight increase in peptide identification rates.

2022-02-28 | PXD010283 | Pride

Dacrymyces ceraceus strain:ATCC 56525 | isolate:ATCC 56525

Project description:Cerinomyces ceraceus ATCC56525 Standard Draft genome sequencing

| PRJNA333794 | ENA

Anomoporia bombycina strain:ATCC 64506 | isolate:ATCC 64506

Project description:Anomoporia bombycina ATCC64506 Standard Draft genome sequencing

| PRJNA333831 | ENA

Usnea florida strain:ATCC 18376 | isolate:ATCC 18376

Project description:Usnea florida ATCC18376 Standard Draft genome sequencing

| PRJNA333495 | ENA

Caloscypha fulgens strain:ATCC 42695 | isolate:ATCC 42695

Project description:Caloscypha fulgens 42695-D Standard Draft genome sequencing

| PRJNA333792 | ENA

Lindgomyces ingoldianus strain:ATCC 200398 | isolate:ATCC 200398

Project description:Lindgomyces ingoldianus ATCC 200398 Standard Draft genome sequencing

| PRJNA333498 | ENA

Loramyces juncicola strain:ATCC 46458 | isolate:ATCC 46458

Project description:Loramyces juncicola ATCC 46458 Standard Draft genome sequencing

| PRJNA334368 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data