Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rattus norvegicus

ABSTRACT: The differential gene expressions of rat mucosa colonized with single or multi-species of MRSA or PA were studied using RNA-sequencing of total transcriptome.

PROVIDER: PRJNA373851 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5240060.fastq.gz	Fastqsanger.gz
	SRR5240057.fastq.gz	Fastqsanger.gz
	SRR5240058.fastq.gz	Fastqsanger.gz
	SRR5240059.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

The differential gene expressions of rat mucosa colonized with single or multi-species of MRSA or PA were studied using RNA-sequencing of total transcriptome.

Project description:The differential gene expressions of rat mucosa colonized with single or multi-species of MRSA or PA were studied using RNA-sequencing of total transcriptome. In multi-species in-vitro biofilms PA partially inhibited SA growth. However, no significant inhibition of MRSA was detected during in-vivo colonization of multi-species in rat bullae. A total of 1797 genes were significantly (p < 0.05) differentially expressed in MRSA or PA or MRSA+PA colonized rat middle ear mucosa with respect to the control. The poly-microbial colonization of MRSA and PA induced the differential expression of a significant number of genes that are involved in immune response, inflammation, signaling, development, and defense; these were not expressed with single species colonization by either MRSA or PA. Genes involved in defense, immune response, inflammatory response, and developmental process were exclusively up-regulated, and genes that are involved in nervous system signaling, development and transmission, regulation of cell growth and development, anatomical and system development, and cell differentiation were down-regulated after multi-species inoculation.

2018-01-15 | GSE94722 | GEO

Rattus norvegicus breed:Sprague Dawley

Project description:Differential gene expression of rat middle ear mucosa colonized with MRSA or Pseudomonas aeruginosa single species or multi-species

| PRJNA369443 | ENA

Rattus norvegicus

Project description:Gene expressions in rat intracranial aneurysms

| PRJNA361282 | ENA

Rattus norvegicus

Project description:Voluntary exercise, rat, colon mucosa

| PRJNA93253 | ENA

Rattus norvegicus

Project description:Effect of Wakame Containing Diets on Hepatic Gene Expressions in Rat

| PRJNA351854 | ENA

Differential gene expressions for androgen-induced benign prostatic hyperplysia rat underwent oral treatment of metabolic peptide ghrelin

Project description:To preliminary distinguish differential gene expressions in BPH-rat prostate after oral treatment of ghrelin.

2019-04-11 | GSE129561 | GEO

Effects of Mucosa associated fungi on IEC

Project description:RNAseq of intestinal epithelial cells from ASF Mice colonized with a consortium of mucosa associated fungi

2021-12-30 | GSE141622 | GEO

Rattus norvegicus

Project description:Mincle-mediated signaling leads to characteristic gene expressions in rat mast cells

| PRJNA318859 | ENA

Rattus norvegicus

Project description:Effect of a High Phosphorus Diet on Renal Gene Expressions in Rat

| PRJNA144981 | ENA

Transcription profiling of rat heart ventricle samples from animals subjected to differing exercise regimes

Project description:Gene expression and phenotypic consequences of laboratory housing in rats. Disease related-phenotypes and associated gene expressions of sedentary animals (living solely in a standard cage) were compared with animals that had access to twice-weekly one-hour physical activity in a large box (PA) and with those that had access to voluntary running wheel exercise (EX). Experiment Overall Design: The left ventricle of 16 month female Sprague-Dawley rats was used for RNA extraction and hybridization on Affymetrix GeneChip Rat Genome 230 2.0 Arrays. Twelve animals from each treatment group (SED, PA, and EX) were used for microarray analysis (4 animals pooled per GeneChip).

2007-11-29 | E-GEOD-5085 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data