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RNA-Seq gene expression regulated by Drosophila insulin-like peptides DILP2 and DILP5 in S2 cells

ABSTRACT: RNA-Seq gene expression regulated by Drosophila insulin-like peptides DILP2 and DILP5 in S2 cells

OTHER RELATED OMICS DATASETS IN: PXD009240

PROVIDER: PRJNA437433 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR6818710.fastq.gz	Fastqsanger.gz
	SRR6818711.fastq.gz	Fastqsanger.gz
	SRR6818712.fastq.gz	Fastqsanger.gz
	SRR6818713.fastq.gz	Fastqsanger.gz
	SRR6818714.fastq.gz	Fastqsanger.gz

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RNA-Seq gene expression regulated by Drosophila insulin-like peptides DILP2 and DILP5 in S2 cells

Project description:Mammalian insulin and IGF induce similar but not identical changes in gene expression downstream of their respective receptors. Signaling bias at the receptor differentiates the two similar ligands, though the precise mechanism is not entirely understood. We used Drosophila insulin-like peptides DILP2 and DILP5 to determine how similar insulin-like ligands regulate similar and distinct patterns of gene expression in S2 cells by RNA-Seq. Overall, DILP2 and DILP5 stimulate many of the same changes in gene expression. However, some genes are uniquely regulated by DILP2 or by DILP5. Shared and distinct gene targets were validated by q-RT-PCR with indepedent replicates. Some unique gene targets of DILP2 are involved in sugar metabolism, which is functionally related in vivo to DILP2 and not DILP5. We find that gene expression is largely regulated in parallel by DILP2 and DILP5 but some key unique targets may lead to differential physiological functions for the two insulin-like genes.

2018-06-14 | GSE111560 | GEO

RNA-Seq gene expression regulated by Drosophila insulin-like peptides DILP2 and DILP5 in S2 cells

Project description:RNA-Seq gene expression regulated by Drosophila insulin-like peptides DILP2 and DILP5 in S2 cells

| PRJNA437433 | ENA

Drosophila insulin-like peptides DILP2 and DILP5 stimulation global phosphoproteome

Project description:Insulin and IGF signaling (IIS) is a complex system that controls diverse processes including growth, development, metabolism, stress responses and aging. Drosophila melanogaster IIS is propagated by eight Drosophila insulin-like peptides (DILPs), homologues of both mammalian insulin and IGFs, with various spatiotemporal expression patterns and functions. DILPs 1-7 are thought to act through a single Drosophila insulin/IGF receptor, InR, but it is unclear how the DILPs thereby mediate a range of physiological phenotypes. We determined the distinct cell signaling effects of DILP2 and DILP5 stimulation upon Drosophila S2 cells. DILP2 and DILP5 induced similar transcriptional patterns, but differed in signal transduction kinetics. DILP5 induced sustained phosphorylation of Akt, while DILP2 produced acute, transient Akt phosphorylation. Accordingly, we used phosphoproteomic analysis to identify distinct patterns of non-genomic signaling induced by DILP2 and DILP5. Across all treatments and replicates, 5250 unique phosphopeptides were identified, representing 1575 proteins. Among these peptides, DILP2, but not DILP5, dephosphorylated Ser15 on glycogen phosphorylase (GlyP), and DILP2, but not DILP5, was subsequently shown to repress enzymatic GlyP activity in S2 cells. The functional consequences of this difference were evaluated in adult Drosophila dilp mutants: dilp2 null adults have elevated GlyP enzymatic activity relative to wildtype, while dilp5 mutants have reduced GlyP activity.

2018-10-19 | PXD009240 | Pride

Blattella germanica Insulin-like Peptides (ILPs)

Project description:Blattella germanica Insulin-like Peptides (ILPs)

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Expression data from Drosophila S2 cells

2012-05-03 | GSE37701 | GEO

Expression data from Drosophila S2 cells

Project description:An Affimetrix GeneChip Drosophila genome 2.0 array was used to study the effect of protocatechuic aldehyde on gene expression. The addition of 0.1 mM protocatechuic aldehyde to Drosophila S2 cells significantly affected the expression of 52 genes, with 29 being up-regulated and 23 being down-regulated. Drosophila S2 cells were incubated with protocatechuic aldehyde (0.1 mM). After 2 hr, the gene expression in Drosophila S2 cells was analyzed using Affymetrix microarrays.

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Expression data from Drosophila S2* cells treated with the steroid hormone 20-hydroxy-ecdysone (20E)

Project description:Previously we and other teams have found that 20E modulates the induction and expression of antimicrobial peptides (AMPs) in immune-challenged Drosophila cell culture or whole animals. To identify potential downstream targets of 20E involved in modulating the immune response we used Affymetrix gene chips (microarrays) to compare the transcriptomes of Drosophila S2* cells treated or not with 20E for 24 hours.

2013-04-13 | GSE46020 | GEO

Drosophila Schneider S2 cell TFIIA-L Immunoprecipitation

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MNase-seq of Drosophila S2 cells

Project description:We report the MNase-diestion coupled to Next Generation Sequencing of Wild type Drosophila S2 cells or S2 cells over-expressing polycomb protein PH

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Non-canonical circadian oscillations in Drosophila S2 cells

Project description:Circadian rhythms are cell-autonomous biological oscillations with a period of about 24 hours. Current models propose that transcriptional feedback loops are the principal mechanism for the generation of circadian oscillations. In these models, Drosophila S2 cells are generally regarded as ‘non-rhythmic’ cells, as they do not express several canonical circadian components. Using an unbiased multi-omics approach, we made the surprising discovery that Drosophila S2 cells do in fact display widespread daily rhythms. Transcriptomics and proteomics analyses revealed that hundreds of genes and their products are rhythmically expressed in a 24-hour cycle. Metabolomics analyses extended these findings and illustrated that central carbon metabolism and amino acid metabolism are the main pathways regulated in a rhythmic fashion. We thus demonstrate that daily genome-wide oscillations, coupled to metabolic cycles, take place in eukaryotic cells without the contribution of known circadian regulators.

2018-07-31 | PXD007669 | Pride

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