Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Kangiella spongicola strain:ATCC BAA-2076

ABSTRACT: Kangiella spongicola strain:ATCC BAA-2076 Genome sequencing and assembly

PROVIDER: PRJNA473557 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	QICH01.dat.gz	Other
	QICH01.fasta.gz	Fasta.gz
	QICH01.master.dat	Other
	QICH01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

dRNA-Seq data for Vibrio campbellii BB120 (ATCC BAA-1116, previously designated as Vibrio harveyi)

Project description:Differential RNA-Seq data for Vibrio campbellii BB120 (ATCC BAA-1116, previously designated as Vibrio harveyi)

2024-07-15 | GSE182898 | GEO

RNA-seq analysis of Helicobacter cinaedi ATCC BAA-847 under microaerobic and aerobic culture conditions

Project description:Helicobacter cinaedi is an emerging bacterial pathogen of immunosuppressed individuals. The species is traditionally thought to require an H2-enhanced microaerobic atmosphere for growth, although it can proliferate under aerobic conditions when co-cultured with epithelial monolayers or supplemented with certain metabolites (notably, L-lactate). The goal of this experiment was to assess the global transcription changes that occur in the H. cinaedi type strain (ATCC BAA-847) under various media and atmospheric conditions. These include bacterial monoculture, as well as co-culture with Caco-2 intestinal epithelial cells. In total, Illumina mRNA-seq (stranded, paired-end) was performed on H. cinaedi grown under 9 in vitro culture conditions (4-5 biologic replicates per condition).

2016-09-19 | E-MTAB-5062 | biostudies-arrayexpress

Comparative transcriptional analysis of Acinetobacter baumannii strain ATCC 17978 and strain 17978hm

Project description:In this study the transcriptomes of Acinetobacter baumannii strains ATCC 17978 and 17978hm were compared. Strain 17978hm is a hns knockout derivative of strain ATCC 17978. Strain 17978hm displays a hyper-motile phenotype on semi-solid Mueller-Hinton (MH) media (0.25% agar). ATCC 17978 and 17978hm from an 37C overnight culture were transferred to the centre of the semi-solid MH plate and incubated at 37C for 8 hours. Only 17978hm cells displayed a motile phenotype and covered the complete surface of the plate. These motile 17978hm cells and the non-motile wild-type ATCC 17978 cells were harvested and RNA was isolated. The comparative transcriptome analysis was performed using the FairPlay labeling kit and a custom made Agilent MicroArray with probes designed to coding regions of the ATCC 17978 genome. The data was analyzed using Agilent GeneSpring GX9 and the significance analysis of microarray MS Excel add-on.

2013-08-05 | GSE40681 | GEO

Ureibacillus terrenus strain:ATCC BAA-384

Project description:Ureibacillus terrenus strain:ATCC BAA-384 Genome sequencing and assembly

| PRJNA551243 | ENA

Mucilaginibacter frigoritolerans strain:ATCC BAA-1854

Project description:Mucilaginibacter frigoritolerans strain:ATCC BAA-1854 Genome sequencing and assembly

| PRJNA257874 | ENA

Altererythrobacter ishigakiensis strain:ATCC BAA-2084

Project description:Altererythrobacter ishigakiensis strain:ATCC BAA-2084 Genome sequencing and assembly

| PRJNA257873 | ENA

Tsukamurella strandjordii strain:ATCC BAA-173

Project description:Tsukamurella strandjordii strain:ATCC BAA-173 Genome sequencing and assembly

| PRJNA397258 | ENA

Clostridioides difficile strain:ATCC BAA-1801

Project description:Clostridioides difficile strain:ATCC BAA-1801 Genome sequencing and assembly

| PRJNA562328 | ENA

Rhodococcus rhodochrous strain:ATCC BAA-870

Project description:Rhodococcus rhodochrous strain:ATCC BAA-870 Genome sequencing and assembly

| PRJNA487734 | ENA

Roseibium hamelinense strain:ATCC BAA-252

Project description:Roseibium hamelinense strain:ATCC BAA-252 Genome sequencing and assembly

| PRJNA257856 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data