Unknown,Transcriptomics,Genomics,Proteomics

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RNA-seq analysis of Helicobacter cinaedi ATCC BAA-847 under microaerobic and aerobic culture conditions


ABSTRACT: Helicobacter cinaedi is an emerging bacterial pathogen of immunosuppressed individuals. The species is traditionally thought to require an H2-enhanced microaerobic atmosphere for growth, although it can proliferate under aerobic conditions when co-cultured with epithelial monolayers or supplemented with certain metabolites (notably, L-lactate). The goal of this experiment was to assess the global transcription changes that occur in the H. cinaedi type strain (ATCC BAA-847) under various media and atmospheric conditions. These include bacterial monoculture, as well as co-culture with Caco-2 intestinal epithelial cells. In total, Illumina mRNA-seq (stranded, paired-end) was performed on H. cinaedi grown under 9 in vitro culture conditions (4-5 biologic replicates per condition).

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Helicobacter cinaedi CCUG 18818 = ATCC BAA-847

SUBMITTER: Jonathan Schmitz 

PROVIDER: E-MTAB-5062 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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