Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Parastagonospora

ABSTRACT: Parastagonospora nodorum and Parastagonospora avenae Genome sequencing and assembly

PROVIDER: PRJNA476481 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	QVWA01.dat.gz	Other
	QVWA01.fasta.gz	Fasta.gz
	QVWA01.master.dat	Other
	QVWB01.dat.gz	Other

Items per page:

1 - 5 of 151

Similar Datasets

Parastagonospora nodorum

Project description:Parastagonospora nodorum Genome sequencing

| PRJNA167719 | ENA

Parastagonospora nodorum

Project description:Parastagonospora nodorum

| PRJNA398070 | ENA

Parastagonospora nodorum Sn4

Project description:Parastagonospora nodorum Sn4 Genome sequencing

| PRJNA170815 | ENA

Parastagonospora nodorum Sn79

Project description:Parastagonospora nodorum Sn79 Genome sequencing and assembly

| PRJNA170816 | ENA

Parastagonospora avenae f. sp. tritici 18332-5

Project description:Parastagonospora avenae f. sp. tritici 18332-5 Genome sequencing and assembly

| PRJNA704493 | ENA

In planta and in vitro RNA sequencing of Parastagonospora nodorum SN15 and a knockout mutant lacking the transcription factor Pf-2.

Project description:The fungus Parastagonospora nodorum infects wheat through the use of necrotrophic effector (NE) proteins that cause host-specific tissue necrosis. The Zn2Cys6 transcription factor PnPf2 positively regulates NE gene expression and is required for virulence on wheat. Little is known about other downstream targets of PnPf2. We compared the transcriptomes of the P. nodorum wildtype and a strain deleted in PnPf2 (pf2-69) during in vitro growth and host infection to further elucidate targets of PnPf2 signalling. Gene ontology enrichment analysis of the differentially expressed (DE) genes revealed that genes associated with plant cell wall degradation and proteolysis were enriched in down-regulated DE gene sets in pf2-69 compared to SN15. In contrast, genes associated with redox control, nutrient and ion transport were up-regulated in the mutant. Further analysis of the DE gene set revealed that PnPf2 positively regulates twelve genes that encode effector-like proteins. Two of these genes encode proteins with homology to previously characterised effectors in other fungal phytopathogens. In addition to modulating effector gene expression, PnPf2 may play a broader role in the establishment of a necrotrophic lifestyle by orchestrating the expression of genes associated with plant cell wall degradation and nutrient assimilation.

2020-05-13 | GSE150493 | GEO

Fungal genomes that contain ToxA, Bipolaris sorokinana and Parastagonospora nodorum

Project description:Wheat and barley pathogen Bipolaris sorokinanaWheat pathogen Parastagonospora nodorum Genome sequencing and assembly

| PRJNA505097 | ENA

Parastagonospora nodorum SN15

Project description:Phaeosphaeria nodorum SN15

| PRJNA43259 | ENA

Project description:Population genomics of Parastagonospora nodorum

| PRJNA606320 | ENA

Project description:Reference quality resequencing of Parastagonospora nodorum SN15

| PRJNA686477 | ENA