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Fungal genomes that contain ToxA, Bipolaris sorokinana and Parastagonospora nodorum

ABSTRACT: Wheat and barley pathogen Bipolaris sorokinanaWheat pathogen Parastagonospora nodorum Genome sequencing and assembly

PROVIDER: PRJNA505097 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SRZE01.dat.gz	Other
	SRZE01.fasta.gz	Fasta.gz
	SRZE01.master.dat	Other
	SRZF01.dat.gz	Other

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Parastagonospora nodorum

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In planta and in vitro RNA sequencing of Parastagonospora nodorum SN15 and a knockout mutant lacking the transcription factor Pf-2.

Project description:The fungus Parastagonospora nodorum infects wheat through the use of necrotrophic effector (NE) proteins that cause host-specific tissue necrosis. The Zn2Cys6 transcription factor PnPf2 positively regulates NE gene expression and is required for virulence on wheat. Little is known about other downstream targets of PnPf2. We compared the transcriptomes of the P. nodorum wildtype and a strain deleted in PnPf2 (pf2-69) during in vitro growth and host infection to further elucidate targets of PnPf2 signalling. Gene ontology enrichment analysis of the differentially expressed (DE) genes revealed that genes associated with plant cell wall degradation and proteolysis were enriched in down-regulated DE gene sets in pf2-69 compared to SN15. In contrast, genes associated with redox control, nutrient and ion transport were up-regulated in the mutant. Further analysis of the DE gene set revealed that PnPf2 positively regulates twelve genes that encode effector-like proteins. Two of these genes encode proteins with homology to previously characterised effectors in other fungal phytopathogens. In addition to modulating effector gene expression, PnPf2 may play a broader role in the establishment of a necrotrophic lifestyle by orchestrating the expression of genes associated with plant cell wall degradation and nutrient assimilation.

2020-05-13 | GSE150493 | GEO

Parastagonospora nodorum SN15

Project description:Phaeosphaeria nodorum SN15

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Parastagonospora nodorum

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RNA-Seq data used to explore transcriptional dynamics in multipartite fungus-plant interactions: Hordeum vulgare, Serendipita vermifera, Bipolaris sorokiniana

Project description:We addressed the question how the interaction between the beneficial root endophyte Serendipita vermifera (Sv) and the pathogen Bipolaris sorokiniana (Bs) affects fungal behavior and determines barley host responses using a gnotobiotic natural soil-based split-root system for phenotypic and transcriptional analyses.

2019-07-06 | GSE130517 | GEO

Genetic Structure of the Norwegian Parastagonospora nodorum Population.

Project description:The necrotrophic fungal pathogen Parastagonospora nodorum causes Septoria nodorum blotch (SNB), which is one of the dominating leaf blotch diseases of wheat in Norway. A total of 165 P. nodorum isolates were collected from three wheat growing regions in Norway from 2015 to 2017. These isolates, as well as nine isolates from other countries, were analyzed for genetic variation using 20 simple sequence repeat (SSR) markers. Genetic analysis of the isolate collection indicated that the P. nodorum pathogen population infecting Norwegian spring and winter wheat underwent regular sexual reproduction and exhibited a high level of genetic diversity, with no genetic subdivisions between sampled locations, years or host cultivars. A high frequency of the presence of necrotrophic effector (NE) gene SnToxA was found in Norwegian P. nodorum isolates compared to other parts of Europe, and we hypothesize that the SnToxA gene is the major virulence factor among the three known P. nodorum NE genes (SnToxA, SnTox1, and SnTox3) in the Norwegian pathogen population. While the importance of SNB has declined in much of Europe, Norway has remained as a P. nodorum hotspot, likely due at least in part to local adaptation of the pathogen population to ToxA sensitive Norwegian spring wheat cultivars.

| S-EPMC7309014 | biostudies-literature

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