Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

HITS-CLIP of SSB from MDA-231 cells

ABSTRACT: HITS-CLIP of SSB from MDA-231 cells

PROVIDER: PRJNA492922 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7896330.fastq.gz	Fastqsanger.gz
	SRR7896331.fastq.gz	Fastqsanger.gz
	SRR7896332.fastq.gz	Fastqsanger.gz
	SRR7896333.fastq.gz	Fastqsanger.gz
	SRR7896328.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

MBNL1 HITS-CLIP in MDA-MB-231 breast cancer cells

Project description:HITS-CLIP was performed to identify endogenous MBNL1 binding sites on RNAs in MDA-MB-231 breast cancer cells.

2016-10-14 | GSE76486 | GEO

HITS-CLIP of SSB from MDA-231 cells

Project description:We report the CLIP binding interactions from the RNA binding protein SSB

2019-09-25 | GSE120384 | GEO

SRSF1 HITS-CLIP in MDA-LM2

Project description:To identify SRSF1 binding sites on RNAs, we performed HITS-CLIP of endogenous SRSF1 in MDA-LM2 cells

2019-12-26 | GSE131745 | GEO

Nuclear HNRNPA2B1 HITS-CLIP and RNA-seq

Project description:To identify HNRNPA2B1 binding sites on endogenous nuclear RNAs, we performed HITS-CLIP for endogenous HNRNPA2B1 and RNA-seq to analyze the nuclear RNA under either METTL3 or HNRNPA2B1 depletion. Wild type MDA-MB-231 cells were subjected to the HITS-CLIP procedure on immunoprecipitated HNRNPA2B1 associated RNA obtained from the nuclear fraction (Licatalosi D, et al. 2008, Nature 456:464-U22). For RNA-seq, nuclear RNA was extracted from MDA-MB-231 or Hela cells knocked down for METTL3 or HNRNPA2B1.

2015-06-20 | E-GEOD-70061 | biostudies-arrayexpress

SRSF1 HITS-CLIP in MDA-LM2

Project description:SRSF1 HITS-CLIP in MDA-LM2

| PRJNA544632 | ENA

Flag-RBM47 HITS-CLIP in brain metastatic derivatives of MDA-MB-231

Project description:Brain metastatic breast cancer cells were subjected to HITS-CLIP to identify the targets of the RNA binding protein RBM47 MDA231-BrM2a is characterized in PMID: 19421193; Related data published together with these data are found in GSE53779 Non-clonal brain metastatic breast cancer cells stably expressing Flag-tagged, wild-type RBM47 under a doxycline-inducible promoter were treated for three days with doxycycline then UV-irradiated and subjected to Flag HITS-CLIP

2014-06-11 | E-GEOD-58380 | biostudies-arrayexpress