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Oratosquilla oratoria

ABSTRACT: Raw sequence reads and assembly of Oratosquilla oratoria at different temperatures

PROVIDER: PRJNA513161 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR8401970_1.fastq.gz	Fastqsanger.gz
	SRR8401970_2.fastq.gz	Fastqsanger.gz
	SRR8401971_1.fastq.gz	Fastqsanger.gz
	SRR8401971_2.fastq.gz	Fastqsanger.gz
	SRR8401972_1.fastq.gz	Fastqsanger.gz

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Transcriptome Analysis Reveals the Tolerance Mechanism of Mantis Shrimp (Oratosquilla oratoria) under a Lipopolysaccharide Challenge.

Project description:Lipopolysaccharide (LPS), a major cell wall component of Gram-negative bacteria, is considered to lead to some disease development in commercial crustaceans. However, mantis shrimps Oratosquilla oratoria (Crustacea: Stomatopoda) have a strong vitality and ability to resist disease. To study the tolerance mechanism of mantis shrimp, transcriptome analyses were conducted in hepatopancreas of O. oratoria under LPS challenge investigation. Totally, 84?547?044 clean reads were obtained from transcriptomes (43?159?230 in OP (control), 41?387?814 in OL (treatment), respectively). Unigenes, the longest transcript of each gene, with a total length of 68?318?880 bp and the total number of 100?978 were obtained. 8369 (8.28%) of unigenes were successfully annotated in all databases and 54?888 (54.35%) were annotated in at least one database. Finally, 1012 differentially expressed genes (DEGs) including 439 and 573 showed significantly upregulated and downregulated were determined between OL and OP, respectively. Moreover, those DEGs only expressed in OL or OP accounted for 8.99%. The functional classification based on GO and KEGG indicated that the common enrichment categories for the DEGs are "amino sugar metabolic" and "cellular homeostasis" and that the progress of nutrient metabolic and homeostasis in cells is important in facing variable environmental conditions. Protein-protein interaction analysis elucidated proteins, ?-actin (ACTB_G1), T-complex protein subunits (TCPs), heat shock proteins (HSPs), hydroxysteroid dehydrogenase-like protein 2 (HSDL2), kinesin family member 5 (KIF5), methylglutaconyl-CoA hydratase (AUH), and myosin heavy chain (MYH) may play key roles in response to an LPS challenge. This study laid a foundation to further investigate the possible adaptation way that O. oratoria survives in a bacterial challenge.

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