Oratosquilla oratoria
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA531041 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Oratosquilla oratoria Transcriptome or Gene expression
| PRJNA360549 | ENA
Project description:Oratosquilla oratoria Transcriptome or Gene expression
| PRJNA359156 | ENA
Project description:Oratosquilla oratoria Raw sequence reads
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Project description:Oratosquilla oratoria Raw sequence reads
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Project description:Three Oratosquilla oratoria populations 2b-RAD sequencing Raw sequence reads
| PRJNA640985 | ENA
Project description:Raw sequence reads and assembly of Oratosquilla oratoria at different temperatures
| PRJNA513161 | ENA
Project description:Transcriptomic response to thermostress between ecologically divergent populations of Oratosquilla oratoria
| PRJNA475657 | ENA
Project description:Lipopolysaccharide (LPS), a major cell wall component of Gram-negative bacteria, is considered to lead to some disease development in commercial crustaceans. However, mantis shrimps Oratosquilla oratoria (Crustacea: Stomatopoda) have a strong vitality and ability to resist disease. To study the tolerance mechanism of mantis shrimp, transcriptome analyses were conducted in hepatopancreas of O. oratoria under LPS challenge investigation. Totally, 84?547?044 clean reads were obtained from transcriptomes (43?159?230 in OP (control), 41?387?814 in OL (treatment), respectively). Unigenes, the longest transcript of each gene, with a total length of 68?318?880 bp and the total number of 100?978 were obtained. 8369 (8.28%) of unigenes were successfully annotated in all databases and 54?888 (54.35%) were annotated in at least one database. Finally, 1012 differentially expressed genes (DEGs) including 439 and 573 showed significantly upregulated and downregulated were determined between OL and OP, respectively. Moreover, those DEGs only expressed in OL or OP accounted for 8.99%. The functional classification based on GO and KEGG indicated that the common enrichment categories for the DEGs are "amino sugar metabolic" and "cellular homeostasis" and that the progress of nutrient metabolic and homeostasis in cells is important in facing variable environmental conditions. Protein-protein interaction analysis elucidated proteins, ?-actin (ACTB_G1), T-complex protein subunits (TCPs), heat shock proteins (HSPs), hydroxysteroid dehydrogenase-like protein 2 (HSDL2), kinesin family member 5 (KIF5), methylglutaconyl-CoA hydratase (AUH), and myosin heavy chain (MYH) may play key roles in response to an LPS challenge. This study laid a foundation to further investigate the possible adaptation way that O. oratoria survives in a bacterial challenge.
| S-EPMC7017407 | biostudies-literature
Project description:Crustaceans are generally considered more sensitive to ocean warming due to their lack of certain efficient regulators. However, the alterations in the physiology and behavior of crustaceans in response to thermal stress differ vastly even among the infraspecific populations of heterogeneous landscapes. Consequently, understanding the impact of temperature fluctuation on crustacean infraspecific populations might be essential for maintaining a sustainable persistence of populations at existing locations. In the present study, we chose the Japanese mantis shrimp (Oratosquilla oratoria) as the representative crustacean population, and conducted transcriptome analyses in two divergent O. oratoria populations (the Zhoushan and Qingdao populations) under same thermal stress (20-28 °C) to identify the population-specific expression response to thermal stress. The results showed significant differences in gene expressions, GO terms and metabolic pathways between the two populations. We hypothesized that intraspecific mutations in the same or different genes might lead to thermal adaptive divergences. Temperature increases from 20-28 °C produced significant enrichment in GO terms and altered the metabolic pathways in the Zhoushan population despite the lack of differentially expressed unigenes. Therefore, several functional genes with large pleiotropic effects may underlie the response to thermal stress in the Zhoushan population. Furthermore, the most significantly enriched biological processes of the Qingdao population were associated with the state or activity of cells and its significant enriched pathways with genetic information processing as well as immune and environmental information processing. In contrast, the differentially regulated unigenes of the Zhoushan population were primarily involved in the regulatory cellular and transcription processes and the most significant pathways found were metabolic and digestive. Consequently, the regulatory mechanisms of the Zhoushan population are probably more efficient than those of the Qingdao population under the same thermal stress.
| S-EPMC6680513 | biostudies-literature