Built environment microbiomes associated with occurrence of Listeria monocytogenes in fruit processing facilities
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA527988 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR8935870_1.fastq.gz | Fastqsanger.gz | |||
| SRR8935870_2.fastq.gz | Fastqsanger.gz | |||
| SRR8935880_1.fastq.gz | Fastqsanger.gz | |||
| SRR8935880_2.fastq.gz | Fastqsanger.gz | |||
| SRR8935890_1.fastq.gz | Fastqsanger.gz |
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Project description:BACKGROUND:Multistate foodborne disease outbreaks and recalls of apples and apple products contaminated with Listeria monocytogenes demonstrate the need for improved pathogen control in the apple supply chain. Apple processing facilities have been identified in the past as potential sources of persisting L. monocytogenes contamination. In this study, we sought to understand the composition of microbiota in built apple and other tree fruit processing environments and its association with the occurrence of the foodborne pathogen L. monocytogenes. RESULTS:Analysis of 117 samples collected from three apple and other tree fruit packing facilities (F1, F2, and F3) showed that facility F2 had a significantly higher L. monocytogenes occurrence compared to F1 and F3 (p < 0.01). The microbiota in facility F2 was distinct compared to facilities F1 and F3 as supported by the mean Shannon index for bacterial and fungal alpha diversities that was significantly lower in F2, compared to F1 and F3 (p < 0.01). Microbiota in F2 was uniquely predominated by bacterial family Pseudomonadaceae and fungal family Dipodascaceae. CONCLUSIONS:The composition and diversity of microbiota and mycobiota present in the investigated built food processing environments may be indicative of persistent contamination with L. monocytogenes. These findings support the need for further investigation of the role of the microbial communities in the persistence of L. monocytogenes to support the optimization of L. monocytogenes control strategies in the apple supply chain.
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Project description:Context:As obesity has become increasingly widespread, scientists seek better ways to assess and modify built and social environments to positively impact health. The applicable methods and concepts draw on multiple disciplines and require collaboration and cross-learning. This paper describes the results of an expert team?s analysis of how key disciplinary perspectives contribute to environmental context-based assessment related to obesity, identifies gaps, and suggests opportunities to encourage effective advances in this arena. Evidence acquisition:A team of experts representing diverse disciplines convened in 2013 to discuss the contributions of their respective disciplines to assessing built environments relevant to obesity prevention. The disciplines include urban planning, public health nutrition, exercise science, physical activity research, public health and epidemiology, behavioral and social sciences, and economics. Each expert identified key concepts and measures from their discipline, and applications to built environment assessment and action. A selective review of published literature and internet-based information was conducted in 2013 and 2014. Evidence synthesis:The key points that are highlighted in this article were identified in 2014-2015 through discussion, debate and consensus-building among the team of experts. Results focus on the various disciplines? perspectives and tools, recommendations, progress and gaps. Conclusions:There has been significant progress in collaboration across key disciplines that contribute to studies of built environments and obesity, but important gaps remain. Using lessons from interprofessional education and team science, along with appreciation of and attention to other disciplines? contributions, can promote more effective cross-disciplinary collaboration in obesity prevention.
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Project description:Collective efficacy is a prominent explanation for neighborhood crime concentrations. Just as crime is concentrated in particular neighborhoods, within-neighborhoods crime is concentrated in particular criminogenic locations. Research suggests criminogenic locations are determined by features of the built environment. This study links collective efficacy with situational opportunity to propose that collective efficacy facilitates the removal of criminogenic features of the built environment. I test this by examining associations 1) between past collective efficacy and present criminogenic features of the built environment, as well as 2) between those built environment features and crime, net of present collective efficacy. These are modeled using piecewise structural equations with generalized linear mixed-effect regressions on data from 1,641 blocks in 343 Chicago neighborhoods. Four types of police-reported crime are modeled using eight block-level built environment features in the 2003 Chicago Community Area Health Study (CCAHS; N = 3,074) and neighborhood collective efficacy from the CCAHS and the 1995 Project in Human Development in Chicago Neighborhoods (PHDCN) Community Survey (N = 7,672). Findings suggest neighborhoods with high collective efficacy maintain low rates of crime in part by limiting criminogenic built environment features, in particular, abandoned buildings. This crime control pathway is important because changes to the built environment are long lasting and reduce the need for future interventions against crime.
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