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Echium plantagineum

ABSTRACT: Echium plantagineum Transcriptome: Germinal roots

PROVIDER: PRJNA546055 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR9274350_1.fastq.gz	Fastqsanger.gz
	SRR9274350_2.fastq.gz	Fastqsanger.gz
	SRR9274553_1.fastq.gz	Fastqsanger.gz
	SRR9274553_2.fastq.gz	Fastqsanger.gz
	SRR9275625_1.fastq.gz	Fastqsanger.gz

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Project description:Echium plantagineum Transcriptome: Germinal roots

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The complete plastome of <i>Echium plantagineum</i> L. (Boraginaceae), the first chloroplast genome belonging to the <i>Echium</i> genus.

Project description:Besides being a common weed, the presence of Echium plantagineum L. in food and feed commodities can represent a safety hazard due to their content in pyrrolizidine alkaloids. In this study, the complete chloroplast of E. plantagineum isolate BPTPS251 is described, being the first available plastome from an isolate belonging to the Echium genus. The chloroplast genome is 149,776 bp in length with 37.5% GC content, displaying a quadripartite structure that contains a pair of inverted repeats regions (25,754 bp each), separated by a large single-copy (80,978 bp) and a small single-copy (17,290 bp) regions. A total of 131 genes were predicted, including 37 tRNA genes, 8 rRNA genes, and 86 protein-coding genes. The phylogenetic analysis confirmed the placement of E. plantagineum under the Boraginaceae family, belonging to the Boraginales order. This study will contribute to conservation, phylogenetic, and evolutionary studies, as well as DNA barcoding applications for food and feed safety purposes.

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A multi-omics angle sheds light on the molecular mechanisms underlying desiccation tolerance in Craterostigma plantagineum

Project description:The resurrection plant Craterostigma plantagineum possesses an extraordinary capacity to survive long-term desiccation. To enhance our understanding of this phenomenon, complementary transcriptome, soluble proteome and primary metabolome analyses were carried out on plant leaves collected at different physiological stages during a dehydration and rehydration cycle. Dynamic changes in transcript, protein and metabolite levels revealed a unique signature characterizing each stage

2021-04-27 | PXD020923 | Pride

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