Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Danio rerio

ABSTRACT: RNA-Seq of nr5a1a and nr5a1b mutant zebrafish

PROVIDER: PRJNA561212 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10010335_1.fastq.gz	Fastqsanger.gz
	SRR10010335_2.fastq.gz	Fastqsanger.gz
	SRR10010336_1.fastq.gz	Fastqsanger.gz
	SRR10010336_2.fastq.gz	Fastqsanger.gz
	SRR10010337_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 128

Similar Datasets

Role of the Exon Junction Complex in Danio rerio

Project description:The exon junction complex (EJC) is composed of three core proteins Rbm8a, Magoh and Eif4a3 and is thought to play a role in several post-transcriptional processes. In this study we focus on understanding the role of EJC in zebrafish development. We identified transcriptome-wide binding sites of EJC in zebrafish via RNA:protein immunoprecipitation followed by deep sequencing (RIP-Seq). We find that, as in human cells, zebrafish EJC is deposited about 24 nts upstream of exon-exon junctions. We also identify transcripts regulated by Rbm8a and Magoh in zebrafish embryos using whole embryo RNA-seq from rbm8a mutant, magoh mutant and wild-type sibling embryos. This study shows that nonsense mediated mRNA decay is dysregulated in zebrafish EJC mutants.

2019-07-30 | GSE135019 | GEO

Danio rerio strain:AB

Project description:RNA-Seq of a Zebrafish Fanconi Mutant

| PRJNA387484 | ENA

Danio rerio strain:AB

Project description:zebrafish WT vs fras1 Mutant whole-embryo RNA-seq

| PRJNA387483 | ENA

Danio rerio

Project description:Zebrafish presenillin1 mutant transcriptome

| PRJNA263170 | ENA

Construction of Danio rerio Asymmetrical Maps (DreAM)

Project description:Purpose: Construction of 3D zebrafish spatial transcriptomics data for studying the establishment of AP axis. Methods: We performed serial bulk RNA-seq data of zebrafish embryo at three development points. Using the published spatial transcriptomics data as references, we implemented Palette to infer spatial gene expression from bulk RNA-seq data and constructed 3D embryonic spatial transcriptomics. The constructed 3D transcriptomics data was then projected on zebrafish embryo images with 3D coordinates, establishing a spatial gene expression atlas named Danio rerio Asymmetrical Maps (DreAM). Results: DreAM provides a powerful platform for visualizing gene expression patterns on zebrafish morphology and investigating spatial cell-cell interactions. Conclusions: Our work used DreAM to explore the establishment of anteroposterior (AP) axis, and identified multiple morphogen gradients that played essential roles in determining cell AP positions. Finally, we difined a hox score, and comprehensively demonstrated the spatial collinearity of Hox genes at single-cell resolution during development.

2024-04-08 | GSE262578 | GEO

Danio rerio

Project description:Single-cell RNA-seq and ATAC-seq of zebrafish retina

| PRJNA631596 | ENA

Danio rerio

Project description:RNA-seq for developing pectoral fin in zebrafish

| PRJDB9741 | ENA

Danio rerio

Project description:Trancriptome study of zebrafish mutant fn10a

| PRJNA312615 | ENA

Danio rerio

Project description:Zebrafish 24hpf mutant sk8 gene expression