Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression analysis of pancreatic cancer tissues in mice

ABSTRACT: Gene expression analysis of pancreatic cancer tissues in mice

PROVIDER: PRJNA579372 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10342900.fastq.gz	Fastqsanger.gz
	SRR10342901.fastq.gz	Fastqsanger.gz
	SRR10342902.fastq.gz	Fastqsanger.gz
	SRR10342903.fastq.gz	Fastqsanger.gz
	SRR10342904.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 80

Similar Datasets

Gene expression analysis of pancreatic cancer tissues in mice

Project description:To examine effects of environmental risk factors on pancreatic cancer development, we fed control Pdx1-Cre (WT) and Pdx1-Cre; Kras-flox (Kras) mice with a Western alcohol diet containing high-cholesterol and high-saturated fat diet and 3.5% alcohol for 5 months. To enhance alcohol-induced pancreatic injury, we added a low dose of lipopolysaccharide (LPS, 1 μg/ml) to the diet. Mice were also given 7 hourly injections of cerulein (50 μg/kg) 4 times from the 1st to 4th month. To mimic tobacco smoking, we injected tobacco-derived carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK, 100 mg/kg) 4 times from the 1st to 4th month. Pancreas tissues were collected from Pdx1-Cre (n=3, normal) and Pdx1-Cre; Kras-flox (n=6, all) mice. Kras-flox (Kras) mice were also fed a regular chow (n=3, control) or 3.5% alcohol diet (N=3, alcohol) for 5 months. RNA-seq analysis revealed induction of cancer-associated genes by these risk factors in the pancreatic cancer tissues.

2020-10-22 | GSE139357 | GEO

RNA-sequencing of human pancreatic adenocarcinoma cancer tissues

Project description:RNA-seq profiling was conducted on clinically-annotated human pancreatic adenocarcinoma cancer tissues We measured the transcriptome in 51 clinically-annotated human pancreatic adenocarcinoma cancer tissues

2016-06-11 | E-GEOD-79668 | biostudies-arrayexpress

tsRNA sequencing of 3 primary tumor tissues and 3 metastastic tumor tissues of pancreatic cancer

Project description:To identify and characterize differentially expressed tsRNA, we collected 3 primary tissues and 3 liver metastasis tissues in pancreatic cancer, and compared the tsRNA expression profiles between primary tissues and liver metastasis tissues in pancreatic cancer using tsRNA sequencing.

2024-01-01 | GSE251943 | GEO

RNA-sequencing of human pancreatic adenocarcinoma cancer tissues

Project description:RNA-seq profiling was conducted on clinically-annotated human pancreatic adenocarcinoma cancer tissues

2016-06-11 | GSE79668 | GEO

GNPS - Metabolomic analysis of exosome of pancreatic cancer

Project description:Metabolomics analysis of serum exosomes isolated from pancreatic cancer patients and healthy controls.

2019-04-06 | MSV000083669 | GNPS

Proteomic Landscape of Pancreatic Cancer

Project description:Quantitative proteome profiling of 72 samples of tumor and normal tissues from pancreatic cancer (PC) patients, tissues from patients with pancreatitis samples and PDX-derived cell lines.

2022-05-20 | PXD025120 | JPOST Repository

Gene expression of endothelial cells isolated from pancreatic cancer tissues and from chronic pancreatitis tissues

Project description:Endothelial cells existed in the cancer tissue have unique biological characteristics that are different from those found in the noncancerous tissue of the same organ. In order to investigate molecular mechanisms involved in the unique biological phenotypes of endothelial cells in the cancer tissue, we compared gene expression profiles of endothelial cells isolated from pancreatic cancer tissues with those from chronic pancreatitis tissues.

2020-11-10 | GSE151945 | GEO

Gene expression of endothelial cells isolated from pancreatic cancer tissues and from chronic pancreatitis tissues

Project description:Gene expression of endothelial cells isolated from pancreatic cancer tissues and from chronic pancreatitis tissues

| PRJNA637864 | ENA

pancreatic cancer

Project description:pancreatic cancer

| PRJEB40742 | ENA

Potential regulatory proteins in pancreatitis were screened by proteomics using pancreatic tissues of PRSS1 AP mice

Project description:Humanized PRSS1 transgenic mice were constructed and treated with caerulein to mimic the development of human AP and CP. Potential regulatory proteins in pancreatitis were screened by proteomics using pancreatic tissues of PRSS1 AP mice.

2021-09-09 | PXD016651 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data