Project description:We applied high throughput sequencing technology to identify microRNA genes in bighead carp and silver carp. We identified 167 conserved miRNAs in bighead carp and 166 in silver carp. By two computational stragegies, we obtained 39 novel miRNAs in bighead carp and 54 in silver carp, for which, no homologs were found in other species. Several miRNA* sequences were found in our dataset as well, some particular ones might have gene regulation function. Gain and loss of family members were observed in several miRNA families, which partially reflected the fate of miRNA gene duplicates. Total RNA of juvenile bighead carp and silver carp were sequenced on one Solexa lane, respectively.

2010-09-01 | E-GEOD-22232 | biostudies-arrayexpress

Characterization and comparative profiling of microRNA transcriptomes in bighead carp and silver carp

2010-09-01 | GSE22232 | GEO

Cyprinus carpio carpio breed:Yellow River carp | cultivar:Huanghe carp

Project description:Cyprinus carpio carpio breed:Yellow River carp | cultivar:Huanghe carp Raw sequence reads

| PRJNA493161 | ENA

Ctenopharyngodon idella isolate:grass carp

Project description:Ctenopharyngodon idella isolate:grass carp Raw sequence reads

| PRJNA429670 | ENA

Grass carp reovirus strain:873

Project description:Grass carp reovirus(GCRV) circRNAs Raw sequence reads

| PRJNA613422 | ENA