Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Revisiting the effect of PCR replication and sequencing depth on biodiversity metrics in environmental DNA metabarcoding

PROVIDER: PRJNA719103 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14167200_1.fastq.gz	Fastqsanger.gz
	SRR14167200_2.fastq.gz	Fastqsanger.gz
	SRR14167300_1.fastq.gz	Fastqsanger.gz
	SRR14167300_2.fastq.gz	Fastqsanger.gz
	SRR14167201_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 512

Similar Datasets

Project description:Testing DNA and PCR replication for DNA metabarcoding marine macrobenthos

| PRJNA683870 | ENA

freshwater metagenome

Project description:Metabarcoding and morphological macroinvertebrate metrics reveal the same environmental gradients

| PRJNA406941 | ENA

Project description:Monitoring earthworm biodiversity using DNA metabarcoding

| PRJNA783879 | ENA

soil metagenome

Project description:Impacts of DNA extraction method and PCR variability on metabarcoding estimates of soil biodiversity

| PRJNA472204 | ENA

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

Marine Water

Project description:Assessing Eukaryotic Biodiversity in the Florida Keys National Marine Sanctuary Through Environmental DNA Metabarcoding

| PRJNA436594 | ENA

Project description:Environmental DNA detection of plant biodiversity

| PRJNA605442 | ENA

Project description:Monitoring Endangered Freshwater Biodiversity by Environmental DNA

| PRJEB2740 | ENA

Project description:DNA metabarcoding for biodiversity monitoring in Antarctic nearshore environments

| PRJNA720767 | ENA

seawater metagenome

Project description:Hawai'i coral reef seawater, environmental DNA metabarcoding