Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nonlinear control of transcription through promoter-enhancer interactions [Nanopore]

ABSTRACT: Nonlinear control of transcription through promoter-enhancer interactions [Nanopore]

PROVIDER: PRJNA722529 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14256288_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Nonlinear control of transcription through promoter-enhancer interactions

Project description:Nonlinear control of transcription through promoter-enhancer interactions

| PRJNA722525 | ENA

Nonlinear control of transcription through promoter-enhancer interactions [splinkerette PCR]

Project description:Nonlinear control of transcription through promoter-enhancer interactions [splinkerette PCR]

| PRJNA722528 | ENA

Nonlinear control of transcription through promoter-enhancer interactions [cHi-C]

Project description:Nonlinear control of transcription through promoter-enhancer interactions [cHi-C]

| PRJNA722530 | ENA

Nonlinear control of transcription through promoter-enhancer interactions [RNA-seq]

Project description:Nonlinear control of transcription through promoter-enhancer interactions [RNA-seq]

| PRJNA778112 | ENA

Nonlinear control of transcription through promoter-enhancer interactions [Nanopore]

Project description:Chromosome structure in mammals is thought to regulate transcription by modulating spatial proximity between enhancers and promoters. However, the mechanisms by which this occurs remain elusive, and reports suggested moderate to no correlation between physical proximity and transcription. Whether and how chromosome structure is actually translated into transcriptional outputs thus remains unclear. Here we use a novel assay to position an enhancer at hundreds of different chromosomal sites relative to a fixed promoter and quantitatively measure promoter output.

2021-04-26 | GSE172253 | GEO

Enhancer-promoter interactions in acheiropodia patient's cells

Project description:Enhancer-promoter interactions in acheiropodia patient's cells

| PRJNA649358 | ENA

Nonlinear control of transcription through promoter-enhancer interactions [splinkerette PCR]

2021-04-26 | GSE172256 | GEO

Nonlinear control of transcription through promoter-enhancer interactions [cHi-C]

2021-04-26 | GSE172255 | GEO

Nonlinear control of transcription through promoter-enhancer interactions [RNA-seq]

2021-11-05 | GSE188266 | GEO

Genome-wide mapping of promoter-enhancer interactions with HiCap [HiCap]

Project description:Although the locations of promoters and enhancers have been identified in several cell types, we have yet limited information on their connectivity. We developed HiCap, which combines Hi-C with promoter sequence capture, to enable genome-wide identification of regulatory interactions with single-enhancer resolution. HiCap analyses of mouse embryonic stem cells (mESC) identified promoter-enhancer interactions predictive of gene expression change upon perturbation, opening up for genomic analyses of long-range gene regulation. HiCap was designed by combining Hi-C with with sequence capture (for all promoters) and carried out in mouse embryonic stem cells (mESC)

2015-07-06 | E-GEOD-60494 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data