Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Estuarine ecology

PROVIDER: PRJNA730330 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14560400_1.fastq.gz	Fastqsanger.gz
	SRR14560400_2.fastq.gz	Fastqsanger.gz
	SRR14560401_1.fastq.gz	Fastqsanger.gz
	SRR14560401_2.fastq.gz	Fastqsanger.gz
	SRR14560402_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 180

Similar Datasets

Proteomics for Newport Estuary Samples

Project description:Microorganisms are key contributors to biogeochemical flux in estuarine ecosystems. In this study, we conducted proteogenomic characterization of microbial communities from estuarine ecosystems.

2018-07-04 | PXD008093 | Pride

Ability of the marine bacterium Pseudomonas fluorescens BA3SM1 tocounteract the toxicity of CdSe nanoparticles

Project description:CdSe nanoparticles (CdSe NPs) are extensively used in the industry of renewable energies and it is regrettably expectedthat these pollutants will sometime soon appear in marine environmentthrough surface runoff, urban effluents and rivers. Bacteria living in estuarine and coastal sediments will be among the first targets of these new pollutants. The pseudomonads are frequently encountered in these ecosystems. They are involved in several biogeochemical cycles and are known for their high resistance to pollutants. Consequently, this study focussing on the effect of CdSe NPs on the marine strain P. fluorescensBA3SM1 is highly relevant for a number of reasons. First, it aims at improving knowledge about the interactions between bacteria and NPs. This is fundamental to use effectively NPs against pathogenic bacteria. Secondly, this study shows that CdSe NPs of 8 nm in diameter cause a decrease in the secretion of siderophorepyoverdine, a secondary metabolite having a key role in microbial ecology and also employed as a virulence factor in human pathogenic strains such as P. aeruginosa. Consequently, this study highlights that CdSe NPs can have an impact on secondary metabolism of bacteria with environmental and medical implications.

2016-08-17 | PXD004012 | Pride

Identification and characterization analysis of the Oriental River Prawn (Macrobrachium nipponense) microRNA response to hypoxia using a deep sequencing approach [miRNA microarray analysis]

Project description:MicroRNAs (miRNAs) function as regulators in a broad range of phenotypes. The Oriental River Prawn (Macrobrachium nipponense) is an important commercial species that is widely distributed in freshwater and low-salinity estuarine regions of China and other Asian countries. To date, there are no reports describing M. nipponense miRNAs.

2016-06-01 | GSE72416 | GEO

Identification and characterization analysis of the Oriental River Prawn (Macrobrachium nipponense) microRNA response to hypoxia using a deep sequencing approach [miRNA-Seq]

2016-06-01 | GSE72417 | GEO

Proteomic analysis of livers from the European flounder Platichthys flesus from various french estuaries.

Project description:Proteomics of livers from Platichthys flesus after encagement in different estuarine sites for describing key molecular players in response to environmental stresses.

2023-05-21 | PXD030900 | Pride

Affymetrix SNP array data for wild Dutch great tits (Parus major)

Project description:The great tit is a widely studied passerine bird species in ecology that, in the past decades, has provided important insights into speciation, phenology, behavior and microevolution. After completion of the great tit genome sequence, a customized high density 650k SNP array was developed enabling more detailed genomic studies in this species.

2018-02-19 | GSE105131 | GEO

Project description:Ecology restoration

| PRJNA588746 | ENA

Project description:Ranavirus Ecology

| PRJNA504607 | ENA

Project description:Ecology restoration

| PRJNA609767 | ENA

Proteomic analysis of livers from the European flounder Platichthys flesus

Project description:Proteomics of livers from Platichthys flesus caught in the Canche estuary but having undergone a 1-month encagement in three estuarine sites for describing molecular players in response to encagement and environmental stresses.

2020-02-25 | PXD013684 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data