Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vibrio cholerae H1 strain:H1

ABSTRACT: Vibrio cholerae H1 strain:H1 Genome sequencing and assembly

PROVIDER: PRJNA73829 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	AKGH01.dat.gz	Other
	AKGH01.fasta.gz	Fasta.gz
	AKGH01.master.dat	Other
	SRR497954_consensus.fastq.gz	Fastqsanger.gz
	SRR497955_consensus.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 307

Similar Datasets

Expression analysis of Vibrio cholerae O395N1 delta-nqrA-F mutant

Project description:Investigation of whole genome gene expression level changes in a Vibrio cholerae O395N1 delta-nqrA-F mutant, compared to the wild-type strain.

2014-04-01 | GSE56387 | GEO

California Vibrio cholerae CGH

Project description:Environmental isolates of Vibrio cholerae from California coastal water compared to reference strain N16961. A genotyping experiment design type classifies an individual or group of individuals on the basis of alleles, haplotypes, SNP's. Keywords: genotyping_design; array CGH

2007-07-17 | GSE8499 | GEO

Expression analysis of Vibrio cholerae O395N1 delta-nqrA-F mutant

Project description:Investigation of whole genome gene expression level changes in a Vibrio cholerae O395N1 delta-nqrA-F mutant, compared to the wild-type strain. Total RNA recovered from wild-type cultures of VIbrio cholerae O395N1 and its nqrA-F mutant strain. Each chip measures the expression level of 3,835 genes from Vibrio cholerae O1 biovar eltor str. N16961 with twenty average probes/gene, with five-fold technical redundancy.

2014-04-01 | E-GEOD-56387 | biostudies-arrayexpress

Vibrio cholerae Expression Study

Project description:Question Addressed: What is the level of expression of genes in Vibrio cholerae recovered from various conditions. These conditions include samples recovered directly from patients (O139 from stool samples from ICDDR,B and N16961 from stool samples from a vaccine trial held in Cincinnati) as well as standard logarithmic and stationary phase grown bacteria. Labeling reactions were performed in duplicate for each stool derived and in quadruplicate for each in vitro grown strain. A common reference was used for each slide, it was composed of RNA from the exponentially growing 92A1552 V. cholerae strain

2013-05-23 | GSE38178 | GEO

Vibrio cholerae temperature shift microarray analysis

Project description:Temperature is a crucial environmental signal that govers the occurrence of Vibrio cholerae and cholera outbreaks. To understand how temperature impacts the transcriptome of V. cholerae we performed whole-genome level transcriptional profiling using custom microarrays on cells grown at human body temperature (37 C) then shifted to temperatures V. cholerae experience in the environment (15 C and 25 C).

2016-05-09 | GSE81158 | GEO

Vibrio cholerae stringent response

Project description:This study is an analysis of changes in gene expression during stringent response in Vibrio cholerae. V. cholerae cells in mid-log were treated with serine hydroxamate and gene expression was compared to untreated cells. Keywords: Stress response, stringent response

2006-12-28 | GSE6616 | GEO

Comparative genomic hybridization of Vibrio cholerae from California coastal water compared to reference strain N16961

Project description:Environmental isolates of Vibrio cholerae from California coastal water compared to reference strain N16961.

2007-05-23 | E-SMDB-4063 | biostudies-arrayexpress

Vibrio cholerae Expression Study

2013-05-23 | E-GEOD-38178 | biostudies-arrayexpress

Vibrio cholerae biofilm and planktonic growth RNAseq analysis

Project description:To determine transcriptome differences in Vibrio cholerae when grown as planktonic and biofilm cultures, whole-genome level transcriptional profiling was performed using RNAseq analysis. Transcriptomes of biofim and planktonic cultures were compared in this study.

2020-05-28 | GSE135887 | GEO

Vibrio cholerae O395 toxSL33S vs toxSL33S delta rpoE

Project description:Transcriptional profiling of Vibrio Cholerae RpoE deletion mutant in toxSL33S mutation background

2015-08-26 | GSE72378 | GEO