Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome analysis of LPS stimulated PECs (WT and Zc3h12a S513A)

ABSTRACT: Transcriptome analysis of LPS stimulated PECs (WT and Zc3h12a S513A)

PROVIDER: PRJNA746300 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15123701_1.fastq.gz	Fastqsanger.gz
	SRR15123701_2.fastq.gz	Fastqsanger.gz
	SRR15123702_1.fastq.gz	Fastqsanger.gz
	SRR15123702_2.fastq.gz	Fastqsanger.gz
	SRR15123703_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

WT/Usp5-MKO PM cells were stimulated with LPS or not

Project description:Test transcripts in mock and LPS stimulated PM cells from WT or Usp5 myeloid knockout mice

2024-08-11 | GSE240642 | GEO

Expression and ChIP-seq analysis LPS stimulated THP-1 cells

Project description:This SuperSeries is composed of the following subset Series: GSE32141: Expression analysis LPS stimulated THP-1 cells in four paired samples GSE32324: ChIP-seq analysis LPS stimulated THP-1 cells Refer to individual Series

2012-03-07 | E-GEOD-32325 | biostudies-arrayexpress

Analysis of LPS stimulation on F480Hi CD11blo Macrophages from WT and muMT KO mice

Project description:Single cell suspensions from WT or muMT KO mice were stimulated with LPS for 2 hours after which macrophages were sorted

2022-11-01 | GSE139851 | GEO

Analysis of LPS stimulation on F480low CD11b High Macrophages from WT and muMT KO mice

Project description:Single cell suspensions from WT or muMT KO mice were stimulated with LPS for 2 hours after which macrophages were sorted

2022-11-01 | GSE139854 | GEO

Analysis of LPS stimulation on F480Hi CD11blo Macrophages from WT and PI3KδE1020K-B KI mice

Project description:Single cell suspensions from WT or PI3KδE1020K-B KI mice were stimulated with LPS for 2 hours after which macrophages were sorted

2022-11-01 | GSE139852 | GEO

Analysis of LPS stimulation on F480Low CD11b High Macrophages from WT and PI3KδE1020K-B KI mice

Project description:Single cell suspensions from WT or PI3KδE1020K-B KImice were stimulated with LPS for 2 hours after which macrophages were sorted

2022-11-01 | GSE139855 | GEO

TTP-dependent mRNA decay in LPS-stimulated macrophages

2011-12-15 | GSE28880 | GEO

Transcriptome Characterization of Bovine Peripheral Blood Mononuclear Cells Stimulated by LPS

Project description:This study aimed to identify transcription networks and signatures of bovine peripheral blood mononuclear cells in response to LPS stimulation. A total of 464 genes including at least 17 transcription factors were identified to be significantly induced by LPS using a high density bovine oligonucleotide microarray. The network analysis revealed that alternation in gene expression was regulated by transcription factors through potential interaction within the pathway networks in the LPS stimulated cells. Our results demonstrated that specific pathway networks are responsible for transcription regulation in bovine peripheral blood mononuclear cells in response to pathogen components such as LPS.

2008-10-16 | GSE12849 | GEO

Transcriptome Characterization of Bovine Peripheral Blood Mononuclear Cells Stimulated by LPS

2010-05-18 | E-GEOD-12849 | biostudies-arrayexpress

TTP-dependent mRNA decay in LPS-stimulated macrophages

Project description:Controlled decay of cytokine and chemokine mRNAs restrains the time and amplitude of inflammatory responses. Tristetraprolin (TTP) binds to AU-rich elements in 3´ untranslated regions of mRNA and targets the bound mRNA for degradation. We have addressed here the function of TTP in balancing the macrophage activation state by a comprehensive analysis of TTP-dependent mRNA decay in LPS-stimulated macrophages from WT and TTP-deficient mice. We compared mRNA stability in LPS-treated BMDMs from WT and TTP-/- mice by microarray-based measurement of the remnant mRNA after transcriptional blockade with actinomycin D (act D). To increase the sensitivity of the mRNA decay profiling we inhibited the LPS-activated p38 MAPK with the specific inhibitor SB203580 since p38 MAPK negatively regulates the mRNA-destabilizing activity of TTP. LPS stimulation was for 3h before addition of act D. RNA was harvested at 0', 45' and 90' thereafter.

2011-12-15 | E-GEOD-28880 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data