Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: 16S Non-Axenic Cultures

PROVIDER: PRJNA750042 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15295561_1.fastq.gz	Fastqsanger.gz
	SRR15295561_2.fastq.gz	Fastqsanger.gz
	SRR15295562_1.fastq.gz	Fastqsanger.gz
	SRR15295562_2.fastq.gz	Fastqsanger.gz
	SRR15295563_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Gene expression analysis of late exponential vs. stationary phase cultures using a custom designed Pseudo-nitzschia multiseries (Ps-n) cDNA microarray

Project description:Pseudo-nitzschia multiseries (Ps-n) is a toxigenic marine diatom that produces the neurotoxin, domoic acid. We screened for candidate genes that may be involved in domoic acid production by determining changes in transcript profiles in Ps-n cultures that were in late exponential (low-domoic-acid-producing) vs. stationary (high-domoic-acid-producing) growth states. We also identified a number of candidate reference genes for future RT-qPCR studies, based on their stability in this study. Ps-n RNA was extracted from late exponential and stationary phase cultures. Experiments included one axenic culture, and two non-axenic cultures. Experiments were dye-swapped to account for differences in dye labeling and detection efficiencies: a) the axenic culture experiment included 4 technical replicate arrays (i.e., 2 dye-swapped experiments = 4 total hybridizations), and b) the non-axenic culture experiments each included 6 technical replicate arrays (i.e., 3 dye-swapped experiments = 6 total hybridizations).

2013-09-08 | E-GEOD-46845 | biostudies-arrayexpress

microbial mat metagenome

Project description:Metagenomic assembly of new (sub)arctic Cyanobacteria and their associated microbiome from non-axenic cultures

| PRJNA436342 | ENA

mRNA-seq of Brachypodium distachyon roots inoculated with Serendipita indica (syn. Piriformospora indica)

Project description:We sequenced mRNA and small RNA (sRNA) profiles in the interaction between Brachypodium distachyon (Bd) and Serendipita indica (Si; syn. Piriformospora indica), at four (4) days post inoculation (DPI). mRNA sequencing reads of Si-colonized and non-colonized roots, as well as axenic fungal cultures were generated. Three biological samples of each were sequenced, with two technical replicates per sample (PE).

2021-07-15 | E-MTAB-10649 | biostudies-arrayexpress

Project description:BIO290 non-axenic Amoebozoa culture sequencing

| PRJNA824509 | ENA

Project description:RNA-seq of axenic and non-axenic Black soldier fly (Hermetia illucens)

| PRJNA814308 | ENA

sRNA-seq of Brachypodium distachyon roots inoculated with Serendipita indica (syn. Piriformospora indica)

Project description:We sequenced mRNA and small RNA (sRNA) profiles in the interaction between Brachypodium distachyon (Bd) and Serendipita indica (Si; syn. Piriformospora indica), at four (4) days post inoculation (DPI). sRNA sequencing reads of Si-colonized and non-colonized roots, as well as axenic fungal cultures were generated. Three biological samples of each were sequenced, with two technical replicates per sample (SE). Raw reads from sRNA sequencing were submitted to technical adapter trimming (Cutadapt) before upload.

2021-07-15 | E-MTAB-10650 | biostudies-arrayexpress

C. Elegans expression: toxic vs. adequate vs. low selenium

Project description:Genome-wide expression analysis in C. Elegans grown in axenic media with low to toxic selenium concentrations We performed Affymetrix micorarray-based transcriptional profiling on wild-type C. Elegans Bristol N2 grown in low Se axenic media supplemented with five concentrations of selenium, from low to toxic, and harvested at the L4-larva stage. RNA was prepared for hybridization to Affy microarrays from synchronized cultures of wild-type C. elegans seeded in low Se axenic media, supplemented with graded 0, 0.05, 0.1, 0.2, and 0.4 mM Se added as sodium selenite, and harvested at the L4-larva stage (1 culture/sample per Se concentgration).

2014-07-03 | E-GEOD-54011 | biostudies-arrayexpress

Non-axenic microalgae culture

Project description:Non-axenic microalgae culture Raw sequence reads

| PRJNA795303 | ENA

Project description:Whole genome sequencing of non-axenic chrysophytes

| PRJNA546545 | ENA

The volatilomes of Symbiodiniaceae-associated bacteria are influenced by chemicals derived from their algal partners

Project description:Samples are from bacterial cultures of axenic Labrenzia sp. 21p or Marinobacter adhaerens that were incubated in either Symbiodiniaceae (algae) exudate or blank IMK medium.

2019-10-07 | MSV000084431 | MassIVE

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data