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RIP- seq identified the interacted RNAs of SAFA with or without VSV infection

ABSTRACT: RIP- seq identified the interacted RNAs of SAFA with or without VSV infection

PROVIDER: PRJNA821177 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR18517278_1.fastq.gz	Fastqsanger.gz
	SRR18517278_2.fastq.gz	Fastqsanger.gz
	SRR18517279_1.fastq.gz	Fastqsanger.gz
	SRR18517279_2.fastq.gz	Fastqsanger.gz
	SRR18517280_1.fastq.gz	Fastqsanger.gz

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RIP- seq identified the interacted RNAs of SAFA with or without VSV infection

Project description:THP-1 cells were infected with VSV for 6 hours or 24 hours, RiP-seq was did with SAFA antibody.

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RIP- seq identified the interacted RNAs of SAFA with or without VSV infection

Project description:RIP- seq identified the interacted RNAs of SAFA with or without VSV infection

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SAFA in chromatin accessibility regulation

Project description:Wild-type or SAFA-/- THP-1 cells were infected with VSV for 6 hours or 24 hours, samples were collected and send for ATAC-seq.

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RIP-PEN-SHAPE-MaP for 15.5K-interacted RNAs

Project description:RIP-PEN-SHAPE-MaP for 15.5K-interacted RNAs

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Project description:RNA secondary structure is crucial for RNA mentalism, including transcription, splicing, translation, RNA-binding protein interaction as well as turnover. The kink-turn (K-turn) structure motif is is an RNA three-dimensional (3D) structure that exists in all three primary phylogenetic domains and plays vital roles in RNA metabolism. In order to investigate the K-turn secondary structure in vivo, we combined SHAPE-Map and our RIP-PEN-seq to profile the RNA structure of 15.5K-interacted RNAs.

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UV cross-linking RIP-seq of VSV-GFP-infected HEK293T cells overexpressed PTENα

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