Yuhina occipitalis
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA831123 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:The 1KITE project: evolution of insects
| PRJNA267968 | ENA
Project description:Pheropsophus occipitalis MacLeay is a predatory enemy prey heavily on agricultural pests. The length of the complete mitochondrial genome of P. occipitalis was 16,800 bp with 20.4% GC content, including 41.2% A, 11.9% C, 8.4% G, 38.5% T. The genome encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), two ribosomal RNA genes (rRNA). Phylogenetic analysis showed that P. occipitalis was clustered with Pheropsophus bimaculatus and Pheropsophus sobrinus. This study provided a scientific basis for the population genetics, phylogeny, and molecular taxonomy of P. occipitalis.
| S-EPMC8797729 | biostudies-literature
Project description:The Agrilus occipitalis species-group is redefined and diagnosed. Two species from this group, Agrilus auriventris Saunders, 1873 and Agrilus occipitalis (Eschscholtz, 1822), are known as the serious pests of cultivated Citrus trees. Overall twenty-three taxa are included in the Agrilus occipitalis species-group. A complete list of references, type material, species examined and distribution is given for each taxon. The host plants, adult occurrence and altitude range is cited for most taxa. Habitus of all taxa and aedeagi of available males are pictured. Images of primary type specimens are provided. A character state matrix table for diagnostic characters is given for all taxa to facilitate their determination. The following new taxonomic and nomenclatural acts are proposed. New species:eight new species are described: Agrilus mucidus sp. n., Agrilus nebulosus sp. n., Agrilus picturatus sp. n., Agrilus pluvius sp. n., Agrilus pseudoambiguus sp. n., Agrilus tesselatus sp. n., Agrilus trepanatus sp. n. and Agrilus umrongso sp. n. Proposed synonyms: eight synonyms are proposed: celebicola Obenberger, 1924, syn. n. (synonym of occipitalis Eschscholtz, 1822); connexus Kerremans, 1900, syn. n. (synonym of occipitalis Eschscholtz, 1822); cupricauda Saunders, 1867 syn. n. (synonym of occipitalis Eschscholtz, 1822); evinadus Gory & Laporte, 1839, syn. n. (synonym of occipitalis Eschscholtz, 1822); nirius Obenberger, 1924 syn. reconfirmed (synonym of occipitalis Eschscholtz, 1822); oblatus Kerremans, 1900, syn. n. (synonym of occipitalis Eschscholtz, 1822); samoensis Blair, 1928, syn. n. (synonym of auriventris Saunders, 1873); tebinganus Obenberger, 1924, syn. n. (synonym of occipitalis Eschscholtz, 1822). New lectotype designations: six lectotypes are designated: Agrilus celebicola Obenberger, 1924; Agrilus cupricauda Saunders, 1867; Agrilus korenskyi Obenberger, 1923; Agrilus kurandae Obenberger, 1923; Agrilus nirius Obenberger, 1924; Agrilus nitidus Kerremans, 1898.
| S-EPMC3650829 | biostudies-other
Project description:The White-headed Vulture Trigonoceps occipitalis (WhV) is uncommon and largely restricted to protected areas across its range in sub-Saharan Africa. We used the World Database on Protected Areas to identify protected areas (PAs) likely to contain White-headed Vultures. Vulture occurrence on road transects in Southern, East, and West Africa was adjusted to nests per km(2) using data from areas with known numbers of nests and corresponding road transect data. Nest density was used to calculate the number of WhV nests within identified PAs and from there extrapolated to estimate the global population. Across a fragmented range, 400 PAs are estimated to contain 1893 WhV nests. Eastern Africa is estimated to contain 721 nests, Central Africa 548 nests, Southern Africa 468 nests, and West Africa 156 nests. Including immature and nonbreeding birds, and accounting for data deficient PAs, the estimated global population is 5475 - 5493 birds. The identified distribution highlights are alarming: over 78% (n = 313) of identified PAs contain fewer than five nests. A further 17% (n = 68) of PAs contain 5 - 20 nests and 4% (n = 14) of identified PAs are estimated to contain >20 nests. Just 1% (n = 5) of PAs are estimated to contain >40 nests; none is located in West Africa. Whilst ranging behavior of WhVs is currently unknown, 35% of PAs large enough to hold >20 nests are isolated by more than 100 km from other PAs. Spatially discrete and unpredictable mortality events such as poisoning pose major threats to small localized vulture populations and will accelerate ongoing local extinctions. Apart from reducing the threat of poisoning events, conservation actions promoting linkages between protected areas should be pursued. Identifying potential areas for assisted re-establishment via translocation offers the potential to expand the range of this species and alleviate risk.
| S-EPMC4761783 | biostudies-literature
Project description:modENCODE_submission_5986 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. Our 126 strategically selected targets include RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents. We will integrate information generated with existing knowledge on the biology of the targets and perform ChIP-seq analysis on mutant and RNAi extracts lacking selected target proteins. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: L3 Larva; Genotype: wild type; Sex: mixed Male and Hermaphrodite population; EXPERIMENTAL FACTORS: Developmental Stage L3 Larva; temp (temperature) 20 degree celsius; Strain N2; Antibody NURF-1 SDQ3525 (target is NURF-1)
2013-08-28 | E-GEOD-50296 | biostudies-arrayexpress
Project description:Trithorax group (TrxG) proteins counteract Polycomb silencing by an as yet uncharacterized mechanism. A well-known member of the TrxG is the histone methyltransferase Absent, Small, or Homeotic discs 1 (ASH1). In Drosophila ASH1 is needed for the maintenance of Hox gene expression throughout development, which is tightly coupled to preservation of cell identity. In order to understand the molecular function of ASH1 in this process, we performed affinity purification of tandem-tagged ASH1 followed by mass spectrometry (AP-MS) and identified FSH, another member of the TrxG as interaction partner. Here we provide genome-wide chromatin maps of both proteins based on ChIP-seq. Our Dataset comprises of 4 ChIP-seq samples using chromatin from S2 cells which was immunoprecipitated, using antibodies against Ash1, FSH-L and FSH-SL.
2013-06-30 | E-GEOD-30820 | biostudies-arrayexpress