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PIA - Yeast Gold Standard Benchmark Dataset

ABSTRACT: This Dataset is no actual new study but the Yeast Gold Standard benchmark dataset used in the PIA manuscript.

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Saccharomyces Cerevisiae (baker's Yeast)

SUBMITTER: Julian Uszkoreit

LAB HEAD: Katrin Marcus

PROVIDER: PXD000792 | Pride | 2015-05-08

REPOSITORIES: Pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	000.F001285.dat	Other
	000.MSGFplus.mzid	Mzid
	000.RAW	Raw
	000.mgf	Mgf
	000.mzML	Mzml

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Publications

PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface.

Uszkoreit Julian J Maerkens Alexandra A Perez-Riverol Yasset Y Meyer Helmut E HE Marcus Katrin K Stephan Christian C Kohlbacher Oliver O Eisenacher Martin M

Journal of proteome research 20150610 7

Protein inference connects the peptide spectrum matches (PSMs) obtained from database search engines back to proteins, which are typically at the heart of most proteomics studies. Different search engines yield different PSMs and thus different protein lists. Analysis of results from one or multiple search engines is often hampered by different data exchange formats and lack of convenient and intuitive user interfaces. We present PIA, a flexible software suite for combining PSMs from different s ...[more]

PMID: 25938255

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