Proteomics

Dataset Information

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Quantitative Phosphoproteomics Reveals Crosstalk Between Phosphorylation and O-GlcNAc in the DNA Damage Response Pathway


ABSTRACT: The modification of intracellular proteins by monosaccharides of O-linked linked β-N-acetylglucosamine (O-GlcNAc) is thought to mediate proteins by regulating protein phosphorylation, either by modifying and modulating protein kinases or by competing with phosphorylation for hydroxyl residues. To provide molecular insight into the pathways regulated by O-GlcNAc that promote survival in basal conditions or during cellular stress, we have utilized SILAC-based quantitative proteomics to carry out comparisons of site-specific phosphorylation in OGT wild-type (WT) and Null cells. Quantitation of the phosphoproteome demonstrated that out of 5,529 serine/threonine/tyrosine phosphorylated sites, 231 phosphosites were upregulated and 133 downregulated in the absence of O-GlcNAc. The data identified widespread changes in the phosphoproteome upon removal of O-GlcNAc, suggesting that O-GlcNAc regulates processes such as the cell cycle, genomic stability, inflammatory responses and lysosomal biogenesis.

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Mus Musculus (mouse)

TISSUE(S): Cell Culture, Fibroblast

SUBMITTER: Akhilesh Pandey  

LAB HEAD: Akhilesh Pandey

PROVIDER: PXD001153 | Pride | 2015-01-28

REPOSITORIES: Pride

Dataset's files

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MaxQuantOutPut.tar.gz Other
OGT_KO_BR1_1.raw Raw
OGT_KO_BR1_10.raw Raw
OGT_KO_BR1_11.raw Raw
OGT_KO_BR1_12.raw Raw
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Publications

Quantitative phosphoproteomics reveals crosstalk between phosphorylation and O-GlcNAc in the DNA damage response pathway.

Zhong Jun J   Martinez Marissa M   Sengupta Srona S   Lee Albert A   Wu Xinyan X   Chaerkady Raghothama R   Chatterjee Aditi A   O'Meally Robert N RN   Cole Robert N RN   Pandey Akhilesh A   Zachara Natasha E NE  

Proteomics 20150101 2-3


The modification of intracellular proteins by monosaccharides of O-linked β-N-acetylglucosamine (O-GlcNAc) is an essential and dynamic PTM of metazoans. The addition and removal of O-GlcNAc is catalyzed by the O-GlcNAc transferase (OGT) and O-GlcNAcase, respectively. One mechanism by which O-GlcNAc is thought to mediate proteins is by regulating phosphorylation. To provide insight into the pathways regulated by O-GlcNAc, we have utilized SILAC-based quantitative proteomics to carry out compariso  ...[more]

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