Proteomics

Dataset Information

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Human “free-N-terminome” analysis

ABSTRACT: The high throughput characterization of protein N-termini is becoming an emerging challenge in the proteomics and proteogenomics fields. The present study describes the N-terminal oriented analysis of human mitochondria enriched samples by the trimethoxyphenyl phosphonium (TMPP) labeling approach (N-TOP and dN-TOP approaches (Gallien et al, 2009, Bertaccini et al. 2013)). The dN-TOP strategy based on a double light/heavy TMPP labeling has been optimized in order to improve and automate the workflow for efficient, fast and reliable high throughput N-terminome analysis.

INSTRUMENT(S): maXis 4G

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Monocyte, Cell Culture

SUBMITTER: Sebastian VACA  

LAB HEAD: Alain Van Dorsselaer

PROVIDER: PXD001523 | Pride | 2015-06-02

REPOSITORIES: Pride

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Dataset's files

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Action DRS
2010-14-Ama-Tryp-TMPP_15-29.omx.bz2 Other
2010-14-Ama-Tryp-TMPP_30-47.omx.bz2 Other
2010-14-MitoMaxisTrypTMPP.omx.bz2 Other
2010-14-MitoOptiMaxTrypTMPP.omx.bz2 Other
AmazonTryp.mgf Mgf
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Publications

The high throughput characterization of protein N-termini is becoming an emerging challenge in the proteomics and proteogenomics fields. The present study describes the free N-terminome analysis of human mitochondria-enriched samples using trimethoxyphenyl phosphonium (TMPP) labelling approaches. Owing to the extent of protein import and cleavage for mitochondrial proteins, determining the new N-termini generated after translocation/processing events for mitochondrial proteins is crucial to unde  ...[more]

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