Proteomics

Dataset Information

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CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 4

ABSTRACT: The goal of the CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue is to analyze the proteomes of TCGA tumor samples that have been comprehensively characterized by molecular methods. Ninety-five TCGA tumor samples were used in this study.

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Rectal Cancer Cell, Colonic Cancer Cell

DISEASE(S): Colon Adenocarcinoma,Rectum Adenocarcinoma

SUBMITTER: Robbert Slebos  

LAB HEAD: Daniel C. Liebler, Ph.D.

PROVIDER: PXD002044 | Pride | 2015-06-12

REPOSITORIES: Pride

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Dataset's files

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TCGA-AA-A00E-01A-31_W_VU_20121012_A0218_4E_R_FR01.mzML.gz Mzml
TCGA-AA-A00E-01A-31_W_VU_20121012_A0218_4E_R_FR01.mzid.gz Mzid
TCGA-AA-A00E-01A-31_W_VU_20121012_A0218_4E_R_FR01.pride.mgf.gz Mgf
TCGA-AA-A00E-01A-31_W_VU_20121012_A0218_4E_R_FR01.pride.mztab.gz Mztab
TCGA-AA-A00E-01A-31_W_VU_20121012_A0218_4E_R_FR01.raw Raw
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Publications

Proteomic analysis of colon and rectal carcinoma using standard and customized databases.

Slebos Robbert J C RJ   Wang Xia X   Wang Xiaojing X   Zhang Bing B   Tabb David L DL   Liebler Daniel C DC  

Scientific data 20150623

Understanding proteomic differences underlying the different phenotypic classes of colon and rectal carcinoma is important and may eventually lead to a better assessment of clinical behavior of these cancers. We here present a comprehensive description of the proteomic data obtained from 90 colon and rectal carcinomas previously subjected to genomic analysis by The Cancer Genome Atlas (TCGA). Here, the primary instrument files and derived secondary data files are compiled and presented in forms  ...[more]

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