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Zebrafish Deyolking Survey - A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish Embryos

ABSTRACT: Deyolking, the removal of the most abundant protein from the zebrafish (Danio rerio) embryo, is a common technique for in-depth exploration of proteome-level changes in vivo due to various environmental stressors or pharmacological impacts during embryonic stage of development. However, the effect of this procedure on the remaining proteome has not been fully studied. Here, we report a label-free shotgun proteomics survey on proteome coverage and biological processes that are enriched and depleted as a result of deyolking.

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Danio Rerio (zebrafish) (brachydanio Rerio)

TISSUE(S): Embryo

SUBMITTER: Laszlo Prokai

LAB HEAD: Laszlo Prokai

PROVIDER: PXD002124 | Pride | 2015-10-14

REPOSITORIES: Pride

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			Action	DRS
	CDYZFish_inj1-01.msf	Msf
	CDYZFish_inj1.raw	Raw
	CDYZFish_inj2-01.msf	Msf
	CDYZFish_inj2.raw	Raw
	CDYZFish_inj3-01.msf	Msf

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A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish Embryos.

Rahlouni Fatima F Szarka Szabolcs S Shulaev Vladimir V Prokai Laszlo L

Zebrafish 20151006 6

Deyolking, the removal of the most abundant protein from the zebrafish (Danio rerio) embryo, is a common technique for in-depth exploration of proteome-level changes in vivo due to various environmental stressors or pharmacological impacts during embryonic stage of development. However, the effect of this procedure on the remaining proteome has not been fully studied. Here, we report a label-free shotgun proteomics survey on proteome coverage and biological processes that are enriched and deplet ...[more]

PMID: 26439676

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