Proteomics

Dataset Information

0

Arabidopsis Col-0 and cerk1 treated with chitosan or water


ABSTRACT: Microbe-associated molecular pattern (MAMP)-triggered immunity (MTI) is the first layer of molecular defense encountered by pathogens when they attempt to infect plants. MTI is dependent on cell surface pattern-recognition receptors (PRR) which act upstream of mitogen-activated protein kinase (MAPK) pathways. Genetic screening and mutant knock-out lines have largely contributed to our knowledge of MTI. However, genetic screening is confined to phenotype-causing mutations and scarcely enables the discovery of redundantly-acting proteins. We sought to discover protein components that contribute in MTI, using a phenotype-independent approach to discern nucleus-localized proteins after MTI induction. We report on the nuclear proteome of Columbia-0 (Col-0) and chitin elicitor receptor kinase 1 (cerk1) mutant plants 15 min after MTI induction. Our approach revealed that MAMP-treated cerk1 plants had many proteins in common with Col-0-treated plants following chitosan treatment. cerk1 plants also manifested several unique proteins that were absent from Col-0 plants when elicited with chitosan indicating that they also perceive chitosan. Detailed analysis of the identified proteins revealed a nuclear accumulation of transcriptional regulators and transcription factors, DNA-modifying enzymes, RNA-binding proteins and ribosomal proteins. No novel MAPKs were found although Receptor for activated C kinase 1, a scaffold protein involved in defense, and a nucleotide binding leucine-rich repeat protein, implicated in resistance to Leptosphaeria maculans, were discovered in the nucleus of chitosan-treated plants and absent from water-treated control plants.

INSTRUMENT(S): Orbitrap Fusion ETD

ORGANISM(S): Arabidopsis Thaliana (mouse-ear Cress)

TISSUE(S): Plant Cell, Leaf

SUBMITTER: Hugo Germain  

LAB HEAD: Hugo Germain

PROVIDER: PXD003821 | Pride | 2018-10-26

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Col-0_chitosan-1_Ingel20019.raw Raw
Col-0_chitosan-2_Ingel20020.raw Raw
Col_0_H2O-1_Ingel20017.raw Raw
Col_0_H2O-2_Ingel20018.raw Raw
Ingel20017 (F058253).mzid_Ingel20017_(F058253).pride.mgf.gz Mzid
Items per page:
1 - 5 of 40
altmetric image

Publications

An unbiased nuclear proteomics approach reveals novel nuclear protein components that participates in MAMP-triggered immunity.

Fakih Zainab Z   Ahmed Md Bulbul MB   Letanneur Claire C   Germain Hugo H  

Plant signaling & behavior 20160601 6


(MAMP)-triggered immunity (MTI) is the first layer of molecular defense encountered by pathogens. Genetic screens have contributed to our knowledge of MTI, but are limited to phenotype-causing mutations. Here we attempt to identify novel factors involved in the early event leading to plant MTI by comparing the nuclear proteomes of two Arabidopsis genotypes treated with chitosan. Our approach revealed that following chitosan treatment, cerk1 plants had many nuclear accumulating proteins in common  ...[more]

Similar Datasets

2009-11-10 | E-GEOD-17193 | biostudies-arrayexpress
2014-02-01 | E-MEXP-3791 | biostudies-arrayexpress
2020-07-01 | E-MTAB-8868 | biostudies-arrayexpress
2015-08-11 | E-GEOD-68684 | biostudies-arrayexpress
2009-12-10 | E-GEOD-19341 | biostudies-arrayexpress
2023-09-19 | PXD045454 | Pride
2021-01-25 | PXD019928 | Pride
2008-08-31 | E-MEXP-689 | biostudies-arrayexpress
2013-12-22 | E-GEOD-36934 | biostudies-arrayexpress
2006-10-31 | E-CAGE-48 | biostudies-arrayexpress