Dataset Information
Mouse caecum vs faeces - Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse
Ontology highlight
ABSTRACT:
OTHER RELATED OMICS DATASETS IN: PRJEB15341
INSTRUMENT(S): LTQ Orbitrap Velos
ORGANISM(S): Mouse Gut Metagenome
TISSUE(S): Intestine
SUBMITTER: 
Alessandro Tanca
LAB HEAD: Sergio Uzzau
PROVIDER: PXD004911 | Pride | 2017-03-31
REPOSITORIES: Pride
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| Mouse_1_CC.raw | Raw | |||
| Mouse_1_CC_UniProt_database.msf | Msf | |||
| Mouse_1_CC_metagenomic_database.msf | Msf | |||
| Mouse_1_F.raw | Raw | |||
| Mouse_1_F_UniProt_database.msf | Msf |
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Publications
Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse.
Frontiers in microbiology 20170314
Previous studies on mouse models report that cecal and fecal microbial communities may differ in the taxonomic structure, but little is known about their respective functional activities. Here, we employed a metaproteogenomic approach, including 16S rRNA gene sequencing, shotgun metagenomics and shotgun metaproteomics, to analyze the microbiota of paired mouse cecal contents (CCs) and feces, with the aim of identifying changes in taxon-specific functions. As a result, Gram-positive anaerobes wer ...[more]
