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Proteomic analysis of extracellular vesicles from a Plasmodium falciparum Kenyan clinical isolate defines a core parasite secretome

ABSTRACT: In this study, we isolated secreted extracellular vesicles (EVs) from a Kenyan P. falciparum clinical isolate (referred to as 9605) adapted to in vitro culture for a short period and characterized their protein content by mass spectrometry.

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Plasmodium Falciparum

DISEASE(S): Malaria

SUBMITTER: James Wright

LAB HEAD: Jyoti Choudhary

PROVIDER: PXD006925 | Pride | 2017-07-21

REPOSITORIES: Pride

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			Action	DRS
	MaxQuant_Results.zip	Other
	OTNCS25cm_Abdi20151102-A1.raw	Raw
	OTNCS25cm_Abdi20151102-A2.raw	Raw
	OTNCS25cm_Abdi20151102-A3.raw	Raw
	OTNCS25cm_Abdi20151102-A4.raw	Raw

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Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations.

Project description:Shigella flexneri 2a and Shigella sonnei were genetically modified to shed large quantities of outer membrane blebs. The blebs, called Generalized Modules for Membrane Antigens (GMMA), were purified and the protein content was estimated using the label-free iBAQ procedure. There were 2308 proteins identified, 660 in GMMA and 2239 in bacteria, of which 288 (GMMA) and 1695 (bacteria) were common to both S. flexneri 2a and S. sonnei. Protein abundances were classified according to the predicted localization. Predicted outer membrane or periplasmic proteins constituted 95.7% and 98.7% of the protein mass of S. flexneri 2a and S. sonnei GMMA, respectively. Among the remaining proteins, small quantities of ribosomal proteins collectively accounted for more than half of the predicted cytoplasmic protein impurities in the GMMA. In GMMA, the outer membrane and periplasmic proteins were enriched 13.3-fold (S. flexneri 2a) and 8.3-fold (S. sonnei) compared to their abundance in the parent bacteria. Both periplasmic and outer membrane proteins were enriched similarly, suggesting that GMMA have a similar surface to volume ratio as the surface to periplasmic volume ratio in these mutant bacteria. Results in S. flexneri 2a and S. sonnei showed high reproducibility indicating a robust GMMA-producing process.

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Xrn1 biochemically associates to the eisosome after the post diauxic shift in yeast (3)

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Xrn1 biochemically associates to the eisosome after the post diauxic shift in yeast

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Xrn1 biochemically associates to the eisosome after the post diauxic shift in yeast (2)

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Xrn1 biochemically associates to the eisosome after the post diauxic shift in yeast (4)

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Proteomics Informed by Transcriptomics for Characterising Active Transposable Elements and Genome Annotation in Aedes aegypti

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