Proteomics

Dataset Information

0

The Ewing sarcoma secretome and its response to activation of Wnt/beta- catenin signaling


ABSTRACT: Tumor: tumor microenvironment (TME) interactions are critical for tumor progression and the composition and structure of the local extracellular matrix (ECM) are key determinants of tumor metastasis. We recently reported that activation of Wnt/beta- catenin signaling in Ewing sarcoma cells induces widespread transcriptional changes that are associated with acquisition of a metastatic tumor phenotype. Significantly, ECM protein-encoding genes were found to be enriched among Wnt/beta-catenin induced transcripts, leading us to hypothesize that activation of canonical Wnt signaling might induce changes in the Ewing sarcoma secretome. To address this hypothesis, conditioned media from Ewing sarcoma cell lines cultured in the presence or absence of Wnt3a was collected for proteomic analysis. Label-free mass spectrometry was used to identify and quantify differentially secreted proteins. We then used in silico databases to identify only proteins annotated as secreted. Comparison of the secretomes of two Ewing sarcoma cell lines revealed numerous shared proteins, as well as a degree of heterogeneity, in both basal and Wnt-stimulated conditions. Gene set enrichment analysis of secreted proteins revealed that Wnt stimulation reproducibly resulted in increased secretion of proteins involved in ECM organization, ECM receptor interactions, and collagen formation. In particular, Wnt-stimulated Ewing sarcoma cells upregulated secretion of structural collagens, as well as matricellular proteins, such as the metastasis-associated protein, tenascin C (TNC). Interrogation of published databases confirmed reproducible correlations between Wnt/beta-catenin activation and TNC and COL1A1 expression in patient tumors. In summary, this first study of the Ewing sarcoma secretome reveals that Wnt/beta-catenin activated tumor cells upregulate secretion of ECM proteins. Such Wnt/beta-catenin mediated changes are likely to impact on tumor: TME interactions that contribute to metastatic progression.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Cell Culture, Bone Cell

DISEASE(S): Osteosarcoma

SUBMITTER: Felipe da Veiga Leprevost  

LAB HEAD: Elizabeth R. Lawlor

PROVIDER: PXD007909 | Pride | 2018-02-07

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
UM_Q_50cm_2017_0870.msf Msf
UM_Q_50cm_2017_0870.mzML Mzml
UM_Q_50cm_2017_0870.pdResult Other
UM_Q_50cm_2017_0870.raw Raw
UM_Q_50cm_2017_0871.msf Msf
Items per page:
1 - 5 of 37
altmetric image

Publications

The Ewing Sarcoma Secretome and Its Response to Activation of Wnt/beta-catenin Signaling.

Hawkins Allegra G AG   Basrur Venkatesha V   da Veiga Leprevost Felipe F   Pedersen Elisabeth E   Sperring Colin C   Nesvizhskii Alexey I AI   Lawlor Elizabeth R ER  

Molecular & cellular proteomics : MCP 20180131 5


Tumor: tumor microenvironment (TME) interactions are critical for tumor progression and the composition and structure of the local extracellular matrix (ECM) are key determinants of tumor metastasis. We recently reported that activation of Wnt/beta-catenin signaling in Ewing sarcoma cells induces widespread transcriptional changes that are associated with acquisition of a metastatic tumor phenotype. Significantly, ECM protein-encoding genes were found to be enriched among Wnt/beta-catenin induce  ...[more]

Similar Datasets

2020-06-23 | GSE124523 | GEO
2016-11-30 | GSE75859 | GEO
| PRJNA512292 | ENA
2017-11-09 | PXD007947 | Pride
2022-12-19 | GSE200508 | GEO
2020-05-27 | PXD016172 | Pride
2012-06-30 | E-GEOD-38392 | biostudies-arrayexpress
2010-04-01 | E-GEOD-15696 | biostudies-arrayexpress
2018-10-25 | PXD010421 | Pride
2016-02-23 | GSE78159 | GEO