Proteomics

Dataset Information

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Cytological, biochemical and molecular events related to the embryogenic state in Douglas-fir


ABSTRACT: Objectives: to characterize and to better understand differences at a protein level in embryonic and non-embryogenic tissues of embryonal masses in Douglas-fir. In Europe, Douglas-fir is a major species for reforestation with increasing demand for its wood. Harvested stems provide timber of outstanding wood quality, mechanical properties and durability. Commercial Douglas-fir plantations in France are limited by the ability to produce seed from the latest breeding developments. Somatic embryogenesis is considered a promising biotechnology for large-scale clonal propagation of forest trees, due to the high multiplication rates it can provide. Moreover, embryogenic cultures are amenable to both cryogenic storage for long-term preservation of genetic resources and genetic engineering (including genome editing) for functional characterization of genes expressed during embryogenesis. In conifers, embryogenic cultures take the form of embryonal mass made up of early differentiated cells forming immature somatic embryos that proliferate via cleavage polyembryony. In Douglas-fir embryogenic lines consisting in embryonal mass have been compared to non-embryogenic callus during their proliferation. Comparison of proteomes (free-gel proteomics) of embryonal mass vs non-embryogenic callus were performed.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Pseudotsuga Menziesii

TISSUE(S): Embryo

SUBMITTER: Stephane Claverol  

LAB HEAD: Stephane Claverol

PROVIDER: PXD011176 | Pride | 2019-05-17

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
ct150915_02.msf Msf
ct150915_02.raw Raw
ct150915_03.msf Msf
ct150915_03.raw Raw
ct150915_04.msf Msf
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Publications


Somatic embryogenesis techniques have been developed for most coniferous species, but only using very juvenile material. To extend the techniques' scope, better integrated understanding of the key biological, physiological and molecular characteristics of embryogenic state is required. Therefore, embryonal masses (EMs) and non-embryogenic calli (NECs) have been compared during proliferation at multiple levels. EMs and NECs originating from a single somatic embryo (isogenic lines) of each of thre  ...[more]

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