Proteomics

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A ¨omic¨ approach to Pyrocystis lunula


ABSTRACT: Pyrocystis lunula (Schutt) is a photoautotrophic unarmoured dinoflagellate, commonly found in marine environments. Today it exist several biotechnological applications derived from the bioluminescent system of this species. From a post-genomic perspective, and in order to study the whole proteome of P. lunula, a ¨omic¨ approach (transcriptomic-proteomic analysis) was initiated using fresh microalgae samples. A total of 80.875.390 reads were generated (400.000 conting, XXX pb) and 17.461 peptides were detected, getting 3.182 protein identification hits. The identified proteins were categorized according to functional description and gene ontology classification. In this study, it has been developed and described the first proteomic analysis of the microalgae P. lunula. In addition to shed light on a series of important factors involved with the processes of regulation of gene expression. The presence of the luciferin-binding protein (LBP), which had not been described so far in Pyrocystis, is highlighted.

INSTRUMENT(S): Orbitrap Fusion

ORGANISM(S): Eukaryota Pyrocystis Lunula

TISSUE(S): Cell Culture

SUBMITTER: Francisco Fernández-Acero  

LAB HEAD: Francisco Javier Fernández Acero

PROVIDER: PXD011555 | Pride | 2019-04-12

REPOSITORIES: Pride

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Publications

An "omic" approach to Pyrocystis lunula: New insights related with this bioluminescent dinoflagellate.

Fajardo Carlos C   Amil-Ruiz Francisco F   Fuentes-Almagro Carlos C   De Donato Marcos M   Martinez-Rodriguez Gonzalo G   Escobar-Niño Almudena A   Carrasco Rafael R   Mancera Juan Miguel JM   Fernandez-Acero Francisco Javier FJ  

Journal of proteomics 20190826


Pyrocystis lunula (Schutt) is a photoautotrophic dinoflagellate without armored form, frequently found in marine environments. Today, there are several biotechnological applications derived from the bioluminescent system of this species. From a post-genomic perspective, in order to have a starting point for studying the proteome of P. lunula, an "omics" approach (transcriptomics-proteomics) was assessed using fresh microalgae samples. A total of 80,874,825 raw reads were generated (11,292,087,50  ...[more]

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