Dataset Information

: Integration of genomic, transcriptomic and proteomic insights into evolved dependence of deep-sea tubeworm holobiont

ABSTRACT: The first integrated genomic, transcriptomic and proteomic analysis of this methane-seep tubeworm decipher the interdependency between the host and symbionts, with an aim to reveal the molecular mechanisms enabling this worm to survive and thrive in chemosynthetic habitats.

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Paraescarpia Cf. Echinospica

TISSUE(S): Trophosome Tissue

SUBMITTER: Yi YANG

LAB HEAD: Pei-Yuan QIAN

PROVIDER: PXD013944 | Pride | 2019-08-28

REPOSITORIES: Pride

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Genomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts.

Yang Yi Y Sun Jin J Sun Yanan Y Kwan Yick Hang YH Wong Wai Chuen WC Zhang Yanjie Y Xu Ting T Feng Dong D Zhang Yu Y Qiu Jian-Wen JW Qian Pei-Yuan PY

The ISME journal 20191008 1

Deep-sea hydrothermal vents and methane seeps are often densely populated by animals that host chemosynthetic symbiotic bacteria, but the molecular mechanisms of such host-symbiont relationship remain largely unclear. We characterized the symbiont genome of the seep-living siboglinid Paraescarpia echinospica and compared seven siboglinid-symbiont genomes. Our comparative analyses indicate that seep-living siboglinid endosymbionts have more virulence traits for establishing infections and modulat ...[more]

PMID: 31595051

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Project description:Bathymodiolus mussels inhabiting deep-sea hydrothermal vents harbor bacterial symbionts in their gills, which support the animals’ diet. While the basic mechanisms of energy generation and CO2 fixation that drive these symbioses are largely established, details of molecular interactions between the symbiotic partners and adaptations to their respective habitats remain unknown. In this study, we therefore comparatively examined the genomes and proteomes of two Bathymodiolus hosts and their respective symbionts from different geographical locations. Two mussel species were proteomically compared: i) B. thermophilus mussel containing sulfur-oxidizing symbiont from the east pacific rise. thermophilus and ii) B. azoricus containing thiotrophic and methanotrophic symbionts from the mid-atlantic ridge. Symbionts (for both species) and host components (for B. azoricus) were selectively enriched using a multi-step centrifugation procedure. Enriched host and symbiont fractions along with unenriched gill foot tissue were subject to in-depth semi-quantitative proteomic analyses using the orbitrap and velos mass spectrometers. Proteins were quantified based on their spectral counts using the normalized spectral abundance factor (NSAF) method. We identified common strategies of metabolic interactions that provide mutual nutritional support between host and symbionts, such as the detoxification of ambient sulfide by the Bathymodiolus host, which provides a stable thiosulfate reservoir for the thiotrophic symbionts, and a putative amino acid cycling mechanism that could supply the host with symbiont-derived amino acids. A suite of genes and proteins putatively related to virulence or defense functions was particularly abundant in the B. thermophilus symbiont, compared to its symbiont relatives, and may pose a host species-specific adaptation. Our results reveal both, a high degree of integration between the symbiotic partners, and great potential to adapt to the prevailing environment, which facilitate the holobiont’s survival in its hydrothermal vent habitat.

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