Proteomics

Dataset Information

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Identification of full length, splicing and cleavage products of SufB protein of SUF-complex of Mycobacterium tuberculosis


ABSTRACT: SufB, an Fe-S cluster assembly protein is critical for mycobacterial survival and virulence; but as a protein still at its nascent stage. SufB is interrupted by an intein sequence, which excises itself out from the full length protein post-translationally. Intein splicing is crucial for the activation of SufB, where intein(I) is excised and final functional product is generated by the ligation of flanking regions, known as Extein or Ligated extein(LE). Functional SufB is coordinating with other Suf proteins of SUF complex to generate Fe-S cluster. These are important for the central metabolism, gene expression, DNA repair etc. During the process of splicing, SufB has a tendency to generate off pathway products as N-cleavage (NC) and N-Extein (NE). In this project we have confirmed the identities of Mycobacterium tuberculosis full length SufB protein (precursor/p), SufB Intein (i), SufB Extein (ligated Extein/le), N-terminal cleavage product (nc) and N-extein (ne) by MALDI TOF/TOF mass spectrometry via gel based proteomics method .

INSTRUMENT(S): TOF/TOF 5800

ORGANISM(S): Mycobacterium Tuberculosis Mycobacterium Tuberculosis H37rv

SUBMITTER: SASMITA NAYAK  

LAB HEAD: Dr Sasmita Nayak

PROVIDER: PXD015199 | Pride | 2022-02-15

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
F045944.dat Other
F045944.mgf Mgf
F045944.xml Xml
F045945.dat Other
F045945.mgf Mgf
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Publications

Gold Nanoparticles Augment N-Terminal Cleavage and Splicing Reactions in <i>Mycobacterium tuberculosis</i> SufB.

Nanda Ananya A   Nasker Sourya Subhra SS   Kushwaha Anoop K AK   Ojha Deepak Kumar DK   Dearden Albert K AK   Nayak Saroj K SK   Nayak Sasmita S  

Frontiers in bioengineering and biotechnology 20211223


Protein splicing is a self-catalyzed event where the intervening sequence intein cleaves off, joining the flanking exteins together to generate a functional protein. Attempts have been made to regulate the splicing rate through variations in temperature, pH, and metals. Although metal-regulated protein splicing has been more captivating to researchers, metals were shown to only inhibit splicing reactions that confine their application. This is the first study to show the effect of nanoparticles  ...[more]

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